October 2003 Archives by thread

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Starting: Wed Oct 1 02:25:22 MEST 2003
Ending: Fri Oct 31 23:14:12 MEST 2003
Messages: 340

• [BioC] Re: Better mailing list archives {was "Searching BioC .."}   Warnes, Gregory R
  • [BioC] Re: Better mailing list archives {was "Searching BioC .."}   Friedrich.Leisch at ci.tuwien.ac.at
• [BioC] Re: Better mailing list archives {was "Searching BioC .."}   Warnes, Gregory R
• [BioC] Time series data   Mike Schaffer
  • [BioC] Time series data   Vincent Carey 525-2265
• [BioC] Searching BioC mailing lists   Adaikalavan RAMASAMY
  • [BioC] Searching BioC mailing lists   Jeff Gentry
    • [BioC] Re: Better mailing list archives {was "Searching BioC .."}   Martin Maechler
• [BioC] p-values for multtest   Marcus Davy
• [BioC] limma: read.imagene patch   Yves Bastide
  • [BioC] limma: read.imagene patch   Gordon Smyth
• [BioC] multiple image plots   Naomi Altman
  • [BioC] multiple image plots   Vincent Carey 525-2265
• [BioC] Searching BioC mailing lists   Gordon Smyth
• [BioC] Limma background subtraction etc   Jason Skelton
  • [BioC] Limma background subtraction etc   Gordon Smyth
• [BioC] Linear and spline normalization   Laurent Gautier
• [BioC] Re: time serie data   Nicholas Lewin-Koh
• [BioC] affy devel fails to install with getBioC and Rbeta1.8.0   James MacDonald
  • [BioC] Gene Screening.   Stephen Nyangoma
• [BioC] marrayInfo linked to marrayRaw   Naomi Altman
• [BioC] Off topic: predoctoral grant   Ramon Diaz-Uriarte
• [BioC] Searching BioC mailing lists   Adaikalavan RAMASAMY
• [BioC] affy devel fails to install with getBioC and Rbeta1.8.0   Nicholas Lewin-Koh
  • [BioC] affy devel fails to install with getBioC and Rbeta1.8.0   Vincent Carey 525-2265
• [BioC] Gene Screening.   Subramanian Karthikeyan
• [BioC] Re: limma package   Hua Weng
  • [BioC] Re: limma package   Gordon Smyth
• [BioC] Gene Screening.   Stephen Henderson
• [BioC] read.affybatch fails with DrosGenome1 chips   James MacDonald
• [BioC] Re: problems with getBioC/R   Kasper Daniel Hansen
• [BioC] Re: problems with getBioC/R   Kasper Daniel Hansen
• [BioC] R18b and affy pack   Phguardiol at aol.com
• [BioC] R18b and affy pack   James MacDonald
• [BioC] automatically load CDF files/ under UNIX   Simon Lin
  • [BioC] automatically load CDF files/ under UNIX   Laurent Gautier
• [BioC] Biobase load failed   Scott Norton
  • [BioC] Biobase load failed   Vincent Carey 525-2265
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] just a suggestion ?   Phguardiol at aol.com
• [BioC] gcrma   Raffaele Calogero
  • [BioC] gcrma   A.J. Rossini
  • [BioC] gcrma   Rafael A. Irizarry
• [BioC] Pooling in microarray studies   James MacDonald
• [BioC] Pooling in microarray studies   Tan, MinHan
  • [BioC] Pooling in microarray studies   Wiesner Vos
    • [BioC] Pooling in microarray studies   Kenny Ye
• [BioC] Pooling in microarray studies   Christina Kendziorski
• [BioC] Pooling in microarray studies   James MacDonald
• [BioC] Pooling in microarray studies   Dapeng Cui
• [BioC] Pooling in microarray studies   Tan, MinHan
• [BioC] RMA and GeneSpring?   Dapeng Cui
  • [BioC] RMA and GeneSpring?   Fátima Núñez
• [BioC] Re: Pooling in Microarray Studies (Eric Blalock)   Eric
• [BioC] Pooling in microarray studies   Wiesner Vos
• [BioC] Pooling in microarray studies   Crispin Miller
• [BioC] F.test and esApply   Stephen Henderson
• [BioC] F.test and esApply   Stephen Henderson
• [BioC] installation problem   Weiming Zhang
  • [BioC] installation problem   Vincent Carey 525-2265
    • [BioC] installation problem   Weiming Zhang
    • [BioC] installation problem   Weiming Zhang
      • [BioC] "Rgraphviz" installation problem   Martin Maechler
• [BioC] 3 questions about Affy: expresso()   adumas at ucla.edu
• [BioC] Re: Pooling in microarray studies   Nicholas Lewin-Koh
• [BioC] limma plots   Jason Skelton
  • [BioC] limma plots   Gordon Smyth
• [BioC] 3 questions about Affy: expresso()   James MacDonald
  • [BioC] 3 questions about Affy: expresso()   Rafael A. Irizarry
• [BioC] Histogram and boxplot of MM data   donghu at itsa.ucsf.edu
• [BioC] Rdbi   John Zhang
• [BioC] marrayClass - how to extract expr values for a gene   Naomi Altman
• [BioC] Affy: Present calls in an eset   Phguardiol at aol.com
• [BioC] Affy: Present calls in an eset   Phguardiol at aol.com
• [BioC] Affy: Present calls in an eset   paul.boutros at utoronto.ca
• [BioC] Rdbi   Kasper Daniel Hansen
  • [BioC] Rdbi   Vincent Carey 525-2265
• [BioC] time-course experiments   edoardo missiaglia
  • [BioC] time-course experiments/order-restricted   Vincent Carey 525-2265
• [BioC] RE: Bioconductor Digest, Vol 8, Issue 15   Baker, Stephen
  • [BioC] RE: Bioconductor Digest, Vol 8, Issue 15   Douglas Bates
• [BioC] [BioCBUG] Boston Users Group meeting 7 Nov 03 2pm   Vincent Carey 525-2265
• [BioC] RE: time-course experiments (edoardo missiaglia)   Baker, Stephen
• [BioC] Affy: Present calls in an eset   Arne.Muller at aventis.com
  • [BioC] Affy: Present calls in an eset   A.J. Rossini
• [BioC] order restricted inference   Stefano Barbi
• [BioC] Normalization   Kaushik, Narendra K
• [BioC] Affy: Present calls in an eset   Arne.Muller at aventis.com
  • [BioC] Affy: Present calls in an eset   A.J. Rossini
    • [BioC] Affy: Present calls in an eset   Jenny Drnevich
    • [BioC] Affy: Present calls in an eset   Julian Selley
  • [BioC] Affy: Present calls in an eset   Rafael A. Irizarry
    • [BioC] Affy: Present calls in an eset   Rafael A. Irizarry
• [BioC] Affy: Present calls in an eset   Crispin Miller
  • [BioC] Affy: Present calls in an eset   Ben Bolstad
• [BioC] Normalization   michael watson (IAH-C)
  • [BioC] Normalization   w.huber at dkfz-heidelberg.de
• [BioC] Histogram and boxplot of MM data   James MacDonald
• [BioC] Affy: Present calls in an eset   Arne.Muller at aventis.com
• [BioC] scanner effects   Christopher Wilkinson
• [BioC] Affy: Present calls in an eset   Crispin Miller
  • [BioC] Affy: Present calls in an eset   Francois Collin
• [BioC] Normalization   Adaikalavan RAMASAMY
• [BioC] Source package installation for WinXPpro   Phguardiol at aol.com
• [BioC] Re: [R] Source package installation for WinXPpro   James MacDonald
• [BioC] Partitioning main effects.   Stephen Nyangoma
• [BioC] Re: Affy Present Calls   Eric
  • [BioC] Re: Affy Present Calls   Francois Collin
  • [BioC] Re: Affy Present Calls   Francois Collin
• [BioC] Affy: Present calls in an eset   Stephen Henderson
• [BioC] Affy: gene filtering before or after normalization??   Jing Shen
  • [BioC] Affy: gene filtering before or after normalization??   w.huber at dkfz-heidelberg.de
    • [BioC] Affy: gene filtering before or after normalization??   Francois Collin
• [BioC] Re: Affy Present Calls   Eric
• [BioC] PDNN for 'affy'   Laurent Gautier
• [BioC] Hierarchical clustering/distance   Tan, MinHan
• [BioC] JOB: Biostatistican   Robert Campanell
• [BioC] gcrma bug fixed--currently available from CVS   Wei, Wenbin
• [BioC] gcrma bug fixed--currently available from CVS   John Zhang
• [BioC] repository   Arne.Muller at aventis.com
• [BioC] where are the developmental packages ?!!   Phguardiol at aol.com
  • [BioC] where are the developmental packages ?!!   Robert Gentleman
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Question about MM > PM   s0uchi02
  • [BioC] Question about MM > PM   Laurent Gautier
  • [BioC] Question about MM > PM   w.huber at dkfz-heidelberg.de
• [BioC] PDNN for affy.   Stephen Nyangoma
  • [BioC] PDNN for affy.   Laurent Gautier
    • [BioC] PDNN for affy.   Stephen Nyangoma
      • [BioC] problem with affy and R 1.8.0   Stefano Calza
• [BioC] Data analysis   Jason Skelton
  • [BioC] Data analysis   Gordon Smyth
    • [BioC] Data analysis   Jason Skelton
      • [BioC] Data analysis   Gordon Smyth
• [BioC] Note: No specified download type, defaulting to Source   Sam Lattimore
  • [BioC] Note: No specified download type, defaulting to Source   Jeff Gentry
    • [BioC] Note: No specified download type, defaulting to Source   Richard Finney
      • [BioC] Note: No specified download type, defaulting to Source   Robert Gentleman
• [BioC] Installing BioConductor hangs the R process.   Chevreux, Bastien {VFB~Kaiseraugst}
• [BioC] Anyone Know how to make a fake CEL file?   Park, Richard
  • [BioC] Anyone Know how to make a fake CEL file?   Laurent Gautier
    • [BioC] Anyone Know how to make a fake CEL file?   Rafael A. Irizarry
• [BioC] Conference announcement: Compstat 2004   w.huber at dkfz-heidelberg.de
• [BioC] Setting the spacing between duplicates in limmaGUI   Peter Baker (CMIS, St Lucia)
• [BioC] Setting the spacing between duplicates in limmaGUI   Gordon Smyth
• [BioC] prova   utepandragon at tiscali.it
• [BioC] filter microarray data   utepandragon at tiscali.it
• [BioC] filter microarray data   James MacDonald
• [BioC] Clustering method   s0uchi02
• [BioC] Anyone Know how to make a fake CEL file?   Park, Richard
  • [BioC] Anyone Know how to make a fake CEL file?   Johannes Freudenberg
• [BioC] error message from read.marrayInfo   yjli
  • [BioC] error message from read.marrayInfo   Jean Yee Hwa Yang
• [BioC] The upcoming release: how you might be able to help   A.J. Rossini
• [BioC] RMA and GeneCluster   Huang, Mingqian
• [BioC] RMA and GeneCluster   James MacDonald
• [BioC] limmaGUI: Warning: ActiveTcl could not be found....   Marcelo Luiz de Laia
  • [BioC] limmaGUI: Warning: ActiveTcl could not be found....   A.J. Rossini
    • [BioC] limmaGUI: Warning: ActiveTcl could not be found....   Marcelo Luiz de Laia
• [BioC] error when trying to load the affy library   William Kenworthy
• [BioC] Statisticians - Genome Institute of Singapore   Adaikalavan RAMASAMY
• [BioC] Have the following error message while library(Biobase)!   =?big5?B?sKilycXv?=
• [BioC] error when trying to load the affy library   James MacDonald
• [BioC] very small fold change from RMA data   Dapeng Cui
  • [BioC] very small fold change from RMA data   w.huber at dkfz-heidelberg.de
• [BioC] Have the following error message while library(Biobase)!   James MacDonald
• [BioC] Cannot update from Repos   Arne.Muller at aventis.com
• [BioC] Help: redLines error when using widget.marrayRaw()   ying chen
• [BioC] limmaGUI: Warning: ActiveTcl could not be found...   James Wettenhall
  • [BioC] limmaGUI: Warning: ActiveTcl could not be found...   James Wettenhall
  • [BioC] limmaGUI: Warning: ActiveTcl could not be found...   Marcelo Luiz de Laia
• [BioC] limmaGUI: Input files question!   Marcelo Luiz de Laia
  • [BioC] limmaGUI: Input files question!   A.J. Rossini
  • [BioC] limmaGUI: Input files question!   James Wettenhall
• [BioC] Question   Pratima R Naik
• [BioC] Position in Biostatistics and Bioinformatics   Sophie Gallina
• [BioC] getBioC(relLevel="devel") fails under r-devel   Douglas Bates
  • [BioC] getBioC(relLevel="devel") fails under r-devel   Jeff Gentry
    • [BioC] getBioC(relLevel="devel") fails under r-devel   Douglas Bates
• [BioC] Win32 packages   Jeff Gentry
• [BioC] Error message with ReadAffy   Xuejun Peng
• [BioC] Error message with ReadAffy   Dasgupta, Abhijit (NIH/NCI)
  • [BioC] Error message with ReadAffy   Laurent Gautier
• [BioC] read subset of affy data   Xuejun Peng
  • [BioC] read subset of affy data   Laurent Gautier
• [BioC] Problems with GCOS and affy   Tan, MinHan
  • [BioC] Problems with GCOS and affy   Ben Bolstad
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] read subset of affy data   James MacDonald
  • [BioC] read subset of affy data   Rafael A. Irizarry
    • [BioC] read subset of affy data   Rafael A. Irizarry
• [BioC] (no subject)   Treszl, Andras
• [BioC] How to do normalization without background subtraction in limmaGUI or limma?   ying chen
  • [BioC] How to do normalization without background subtraction in limmaGUI or limma?   Gordon Smyth
    • [BioC] How to do normalization without background subtraction in limmaGUI or limma?   James Wettenhall
• [BioC] affy 1.3.23 Win32 - missing all.rda?   James Wettenhall
• [BioC] How to do normalization without backgroundsubtraction in limmaGUI or limma?   ying chen
• [BioC] limma, imagene analysis   Karin Lemuth
• [BioC] Type III Sum of Squares Calculation   Subramanian Karthikeyan
• [BioC] limma, imagene analysis   James MacDonald
• [BioC] Error with ImaGene out put file in limma   Marcelo Luiz de Laia
  • [BioC] Error with ImaGene out put file in limma   Gordon Smyth
  • [BioC] Error with ImaGene out put file in limma   Gordon Smyth
    • [BioC] Error with ImaGene out put file in limma   Marcelo Luiz de Laia
      • [BioC] Error with ImaGene out put file in limma   Pete
      • [BioC] Error with ImaGene out put file in limma   Marcelo Luiz de Laia
      • [BioC] Error with ImaGene out put file in limma   Gordon K Smyth
      • [BioC] Error with ImaGene out put file in limma   Marcelo Luiz de Laia
• [BioC] Help   pratima naik
• [BioC] Help   pratima naik
  • [BioC] Help   Jean Yee Hwa Yang
• [BioC] Type III Sum of Squares Calculation   Man, Michael
• [BioC] Install issues   Kasper Daniel Hansen
  • [BioC] Install issues   Jeff Gentry
• [BioC] Install issues   Kasper Daniel Hansen
• [BioC] Design Matrix Question   Jason Skelton
  • [BioC] Design Matrix Question   Kenny Ye
    • [BioC] Design Matrix Question   Jason Skelton
      • [BioC] Design Matrix Question   Kenny Ye
      • [BioC] Design Matrix Question   Gordon K Smyth
      • [BioC] Design Matrix Question   Kenny Ye
  • [BioC] Design Matrix Question   Gordon K Smyth
• [BioC] RE: Bioconductor Digest, Vol 8, Issue 34   Baker, Stephen
• [BioC] Affy Question   Jason Skelton
• [BioC] Type III Sum of Squares Calculation   Subramanian Karthikeyan
• [BioC] microarray data representation   Caroline Johnston
• [BioC] microarray data representation   Park, Richard
• [BioC] Affy Question   James MacDonald
• [BioC] Webpage issues?   Jonathan R. Wallace
  • [BioC] Webpage issues?   Jeff Gentry
    • [BioC] Webpage issues?   Jeff Gentry
• [BioC] installation problems   Yectli A Huerta
• [BioC] dye swap vs. control channel   Isaac Mehl
  • [BioC] dye swap vs. control channel   A.J. Rossini
    • [BioC] dye swap vs. control channel   Ramon Diaz-Uriarte
      • [BioC] dye swap vs. control channel   Fatima Sanchez Cabo
• [BioC] Help using annotation data without explicitly building data package   Sean Davis
  • [BioC] Help using annotation data without explicitly building data package   Vincent Carey 525-2265
• [BioC] Begginig doubts about layout and toptable   Marcelo Luiz de Laia
  • [BioC] Begginig doubts about layout and toptable   Pete
• [BioC] Type III Sum of Squares Calculation   Man, Michael
• FW: [BioC] Type III Sum of Squares Calculation   Man, Michael
• [BioC] [BioCBUG] second announcement of Boston BioC users group Nov 7 2003   Vincent Carey 525-2265
• [BioC] Remove some genes from analysis in limma package? Is it possible?   Marcelo Luiz de Laia
  • [BioC] Remove some genes from analysis in limma package? Is it possible?   James Wettenhall
    • [BioC] Remove some genes from analysis in limma package? Is it possible?   Marcelo Luiz de Laia
• [BioC] Interpreting results...   Marcelo Luiz de Laia
  • [BioC] Interpreting results...   James Wettenhall
• [BioC] ImaGene - Data analysis   Karin Lemuth
• [BioC] Limma Vs Imagene?   utepandragon at tiscali.it
  • [BioC] Limma analysis   Pete
    • [BioC] Limma analysis   Gordon Smyth
      • [BioC] Limma analysis   Pete
      • [BioC] Limma analysis   Gordon Smyth
• [BioC] PROBLEMS WITH getBioC function   Stephen Moore
  • [BioC] PROBLEMS WITH getBioC function   Kasper Daniel Hansen
• [BioC] PROBLEMS WITH getBioC function   michael watson (IAH-C)
• [BioC] Error while loading Biobase   Chevreux, Bastien {VFB~Kaiseraugst}
• [BioC] Re: [R] problems with Affy   James MacDonald
• [BioC] Error while loading Biobase   James MacDonald
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Problems with golubEsets dataset   =?GB2312?Q?=CD=F5=CE=BA=C7=BF?=
• [BioC] Finding Out the Fold Changes   Sachin Mathur
• [BioC] Limma & Imagene   cv.vc
  • [BioC] Limma & Imagene   w.huber at dkfz-heidelberg.de
  • [BioC] Limma & Imagene   Marcelo Luiz de Laia
• [BioC] URLs in annotate   Sean Davis
• [BioC] mas5calls   Arne.Muller at aventis.com
  • [BioC] mas5calls   Rafael A. Irizarry
• [BioC] Finding Out the Fold Changes   James MacDonald
• [BioC] Limma & Imagene   James MacDonald
• [BioC] u95a and u95av2   Stephen Henderson
  • [BioC] u95a and u95av2   w.huber at dkfz-heidelberg.de
  • [BioC] u95a and u95av2   Ben Bolstad
• [BioC] Venn Diagrams in Limma   Jason Skelton
  • [BioC] Venn Diagrams in Limma   Gordon Smyth
    • [BioC] Venn Diagrams in Limma   Jason Skelton
      • [BioC] Venn Diagrams in Limma   Gordon Smyth
• [BioC] Finding Out the Fold Changes   Sachin Mathur
• [BioC] Finding Out the Fold Changes   James MacDonald
  • [BioC] Finding Out the Fold Changes   Robert Gentleman
• [BioC] Finding Out the Fold Changes   James MacDonald
• [BioC] citations   Akil Merchant
• [BioC] Error in validityMethod(object): No slot of name "phenoLabels" for this object o   Suresh Kumar Karanam
• [BioC] problems with affy package   Stephen Moore
  • [BioC] problems with affy package   w.huber at dkfz-heidelberg.de
• [BioC] option rm.mask=TRUE in ReadAffy   weiss
  • [BioC] option rm.mask=TRUE in ReadAffy   Laurent Gautier
• Within array replicates in Limma, was: [BioC] Data analysis   Gordon Smyth
• [BioC] 3' 5' ratio   Sylvia Merk
• [BioC] Error in validityMethod(object): No slot of name"phenoLabels" for this object o   James MacDonald
  • [BioC] Error in validityMethod(object): No slot of name"phenoLabels" for this object o   Robert Gentleman
• [BioC] 3' 5' ratio   Crispin Miller
• [BioC] 3' 5' ratio   James MacDonald
• [BioC] 3' 5' ratio   Crispin Miller
• [BioC] annotate installation problem   LIANHE SHAO
  • [BioC] annotate installation problem   A.J. Rossini
• [BioC] Failure to install genefilter, multtest and affy in RAqua on Mac OS X   Paul Dickinson
  • [BioC] Failure to install genefilter, multtest and affy in RAqua on Mac OS X   A.J. Rossini
• [BioC] calculate interaction between aminoacids residues   Fabien Crozet
  • [BioC] calculate interaction between aminoacids residues   A.J. Rossini
    • [BioC] calculate interaction between aminoacids residues   w.huber at dkfz-heidelberg.de
      • [BioC] calculate interaction between aminoacids residues   A.J. Rossini
      • [BioC] calculate interaction between aminoacids residues   Junwen wang
  • [BioC] calculate interaction between aminoacids residues   Junwen wang
    • [BioC] calculate interaction between aminoacids residues   Aedin Culhane
• [BioC] Installing metadata packages..   Samuel Lattimore
• [BioC] how do people handling outliers and masked oligos?   weiss
  • [BioC] how do people handling outliers and masked oligos?   Ben Bolstad
• [BioC] Installing metadata packages..   James MacDonald
• [BioC] Error in load VSN library   James MacDonald
• [BioC] Error in load VSN library   Marcelo Luiz de Laia
  • [BioC] Error in load VSN library   w.huber at dkfz-heidelberg.de
• [BioC] Error in load VSN library   Marcelo Luiz de Laia
• [BioC] Error in load VSN library   James MacDonald
• [BioC] Heatmap function   Marcus
• [BioC] Heatmap function   Furge, Kyle
• [BioC] Creating an new exprSet   Marcelo Luiz de Laia
  • [BioC] Creating an new exprSet   Rafael A. Irizarry
    • [BioC] Creating an new exprSet   Marcelo Luiz de Laia
• [BioC] Trouble getting started with Bioconductor   Paul Cantalupo
  • [BioC] Trouble getting started with Bioconductor   w.huber at dkfz-heidelberg.de
• [BioC] Release of Bioconductor 1.3   A.J. Rossini
• [BioC] a special thanks   A.J. Rossini
• Fwd: Re: Fwd: RE: [BioC] Heatmap function   Marcus
• Fwd: Re: Fwd: Re: [BioC] Heatmap function   Marcus
• [BioC] Hi memory usage...problems   Victor M Trevino-Alvarado
• [BioC] (no subject)   William Kenworthy
• [BioC] option rm.mask=TRUE in ReadAffy   t-kawai at hhc.eisai.co.jp
  • [BioC] option rm.mask=TRUE in ReadAffy   Laurent Gautier
• [BioC] Error using widget.marrayRaw() in library (marrayInput)   Casper Frederiksen
• [BioC] Occasional seg faults in RMA   Crispin Miller
  • [BioC] Occasional seg faults in RMA   Matloob Qureshi
    • [BioC] Occasional seg faults in RMA   Ben Bolstad
• [BioC] Problem-Help   Caroline TRUNTZER
• [BioC] Clustering function   Jason Skelton
• [BioC] help w/ bg.correct.gcrma   Jenny Drnevich
• [BioC] help w/ bg.correct.gcrma   FCollin at genelogic.com
• [BioC] CHRLOC data   Johannes Hüsing

Last message date: Fri Oct 31 23:14:12 MEST 2003
Archived on: Wed Jan 28 23:04:05 MEST 2004

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