October 2003 Archives by date
Starting: Wed Oct 1 02:25:22 MEST 2003
Ending: Fri Oct 31 23:14:12 MEST 2003
Messages: 340
- [BioC] Searching BioC mailing lists
Jeff Gentry
- [BioC] Re: Better mailing list archives {was "Searching BioC .."}
Warnes, Gregory R
- [BioC] Re: Better mailing list archives {was "Searching BioC .."}
Warnes, Gregory R
- [BioC] Re: Better mailing list archives {was "Searching BioC .."}
Martin Maechler
- [BioC] Time series data
Mike Schaffer
- [BioC] Time series data
Vincent Carey 525-2265
- [BioC] Searching BioC mailing lists
Adaikalavan RAMASAMY
- [BioC] Re: Better mailing list archives {was "Searching BioC .."}
Friedrich.Leisch at ci.tuwien.ac.at
- [BioC] p-values for multtest
Marcus Davy
- [BioC] limma: read.imagene patch
Yves Bastide
- [BioC] multiple image plots
Naomi Altman
- [BioC] Searching BioC mailing lists
Gordon Smyth
- [BioC] Limma background subtraction etc
Jason Skelton
- [BioC] Linear and spline normalization
Laurent Gautier
- [BioC] Re: time serie data
Nicholas Lewin-Koh
- [BioC] affy devel fails to install with getBioC and
Rbeta1.8.0
James MacDonald
- [BioC] affy devel fails to install with getBioC and Rbeta1.8.0
Vincent Carey 525-2265
- [BioC] marrayInfo linked to marrayRaw
Naomi Altman
- [BioC] Off topic: predoctoral grant
Ramon Diaz-Uriarte
- [BioC] multiple image plots
Vincent Carey 525-2265
- [BioC] Searching BioC mailing lists
Adaikalavan RAMASAMY
- [BioC] affy devel fails to install with getBioC and Rbeta1.8.0
Nicholas Lewin-Koh
- [BioC] Gene Screening.
Subramanian Karthikeyan
- [BioC] Re: limma package
Hua Weng
- [BioC] Gene Screening.
Stephen Nyangoma
- [BioC] limma: read.imagene patch
Gordon Smyth
- [BioC] Gene Screening.
Stephen Henderson
- [BioC] Limma background subtraction etc
Gordon Smyth
- [BioC] read.affybatch fails with DrosGenome1 chips
James MacDonald
- [BioC] Re: problems with getBioC/R
Kasper Daniel Hansen
- [BioC] Re: problems with getBioC/R
Kasper Daniel Hansen
- [BioC] R18b and affy pack
Phguardiol at aol.com
- [BioC] R18b and affy pack
James MacDonald
- [BioC] automatically load CDF files/ under UNIX
Simon Lin
- [BioC] Biobase load failed
Scott Norton
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] just a suggestion ?
Phguardiol at aol.com
- [BioC] Re: limma package
Gordon Smyth
- [BioC] automatically load CDF files/ under UNIX
Laurent Gautier
- [BioC] gcrma
A.J. Rossini
- [BioC] gcrma
Rafael A. Irizarry
- [BioC] gcrma
Raffaele Calogero
- [BioC] Pooling in microarray studies
James MacDonald
- [BioC] Pooling in microarray studies
Tan, MinHan
- [BioC] Pooling in microarray studies
Christina Kendziorski
- [BioC] Pooling in microarray studies
Kenny Ye
- [BioC] Pooling in microarray studies
James MacDonald
- [BioC] Pooling in microarray studies
Dapeng Cui
- [BioC] Pooling in microarray studies
Tan, MinHan
- [BioC] Biobase load failed
Vincent Carey 525-2265
- [BioC] RMA and GeneSpring?
Dapeng Cui
- [BioC] Re: Pooling in Microarray Studies (Eric Blalock)
Eric
- [BioC] Pooling in microarray studies
Wiesner Vos
- [BioC] Pooling in microarray studies
Wiesner Vos
- [BioC] Pooling in microarray studies
Crispin Miller
- [BioC] F.test and esApply
Stephen Henderson
- [BioC] F.test and esApply
Stephen Henderson
- [BioC] installation problem
Weiming Zhang
- [BioC] 3 questions about Affy: expresso()
adumas at ucla.edu
- [BioC] RMA and GeneSpring?
Fátima Núñez
- [BioC] installation problem
Vincent Carey 525-2265
- [BioC] Re: Pooling in microarray studies
Nicholas Lewin-Koh
- [BioC] limma plots
Jason Skelton
- [BioC] 3 questions about Affy: expresso()
James MacDonald
- [BioC] 3 questions about Affy: expresso()
Rafael A. Irizarry
- [BioC] installation problem
Weiming Zhang
- [BioC] installation problem
Weiming Zhang
- [BioC] Histogram and boxplot of MM data
donghu at itsa.ucsf.edu
- [BioC] limma plots
Gordon Smyth
- [BioC] Affy: Present calls in an eset
A.J. Rossini
- [BioC] Affy: Present calls in an eset
A.J. Rossini
- [BioC] Rdbi
Vincent Carey 525-2265
- [BioC] Affy: Present calls in an eset
Ben Bolstad
- [BioC] Rdbi
John Zhang
- [BioC] marrayClass - how to extract expr values for a gene
Naomi Altman
- [BioC] Affy: Present calls in an eset
Phguardiol at aol.com
- [BioC] Affy: Present calls in an eset
Jenny Drnevich
- [BioC] Affy: Present calls in an eset
Phguardiol at aol.com
- [BioC] Affy: Present calls in an eset
Rafael A. Irizarry
- [BioC] Affy: Present calls in an eset
Francois Collin
- [BioC] time-course experiments/order-restricted
Vincent Carey 525-2265
- [BioC] Affy: Present calls in an eset
paul.boutros at utoronto.ca
- [BioC] Rdbi
Kasper Daniel Hansen
- [BioC] time-course experiments
edoardo missiaglia
- [BioC] "Rgraphviz" installation problem
Martin Maechler
- [BioC] RE: Bioconductor Digest, Vol 8, Issue 15
Baker, Stephen
- [BioC] [BioCBUG] Boston Users Group meeting 7 Nov 03 2pm
Vincent Carey 525-2265
- [BioC] RE: time-course experiments (edoardo missiaglia)
Baker, Stephen
- [BioC] Affy: Present calls in an eset
Arne.Muller at aventis.com
- [BioC] order restricted inference
Stefano Barbi
- [BioC] Normalization
Kaushik, Narendra K
- [BioC] Affy: Present calls in an eset
Arne.Muller at aventis.com
- [BioC] Affy: Present calls in an eset
Crispin Miller
- [BioC] Affy: Present calls in an eset
Julian Selley
- [BioC] Normalization
michael watson (IAH-C)
- [BioC] Histogram and boxplot of MM data
James MacDonald
- [BioC] Affy: Present calls in an eset
Arne.Muller at aventis.com
- [BioC] scanner effects
Christopher Wilkinson
- [BioC] Affy: Present calls in an eset
Crispin Miller
- [BioC] RE: Bioconductor Digest, Vol 8, Issue 15
Douglas Bates
- [BioC] Normalization
w.huber at dkfz-heidelberg.de
- [BioC] Normalization
Adaikalavan RAMASAMY
- [BioC] Source package installation for WinXPpro
Phguardiol at aol.com
- [BioC] Re: [R] Source package installation for WinXPpro
James MacDonald
- [BioC] Partitioning main effects.
Stephen Nyangoma
- [BioC] Re: Affy Present Calls
Francois Collin
- [BioC] Re: Affy Present Calls
Francois Collin
- [BioC] Re: Affy Present Calls
Eric
- [BioC] Affy: Present calls in an eset
Stephen Henderson
- [BioC] Affy: gene filtering before or after normalization??
Jing Shen
- [BioC] Re: Affy Present Calls
Eric
- [BioC] PDNN for 'affy'
Laurent Gautier
- [BioC] Hierarchical clustering/distance
Tan, MinHan
- [BioC] JOB: Biostatistican
Robert Campanell
- [BioC] gcrma bug fixed--currently available from CVS
Wei, Wenbin
- [BioC] gcrma bug fixed--currently available from CVS
John Zhang
- [BioC] repository
Arne.Muller at aventis.com
- [BioC] where are the developmental packages ?!!
Phguardiol at aol.com
- [BioC] where are the developmental packages ?!!
Robert Gentleman
- [BioC] Affy: gene filtering before or after normalization??
w.huber at dkfz-heidelberg.de
- [BioC] Affy: gene filtering before or after normalization??
Francois Collin
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Question about MM > PM
s0uchi02
- [BioC] Question about MM > PM
Laurent Gautier
- [BioC] Question about MM > PM
w.huber at dkfz-heidelberg.de
- [BioC] PDNN for affy.
Stephen Nyangoma
- [BioC] PDNN for affy.
Laurent Gautier
- [BioC] PDNN for affy.
Stephen Nyangoma
- [BioC] Data analysis
Jason Skelton
- [BioC] problem with affy and R 1.8.0
Stefano Calza
- [BioC] Data analysis
Gordon Smyth
- [BioC] Note: No specified download type, defaulting to Source
Sam Lattimore
- [BioC] Note: No specified download type, defaulting to Source
Jeff Gentry
- [BioC] Installing BioConductor hangs the R process.
Chevreux, Bastien {VFB~Kaiseraugst}
- [BioC] Affy: Present calls in an eset
Rafael A. Irizarry
- [BioC] Note: No specified download type, defaulting to Source
Richard Finney
- [BioC] Anyone Know how to make a fake CEL file?
Park, Richard
- [BioC] Anyone Know how to make a fake CEL file?
Laurent Gautier
- [BioC] Conference announcement: Compstat 2004
w.huber at dkfz-heidelberg.de
- [BioC] Conference announcement: Compstat 2004
w.huber at dkfz-heidelberg.de
- [BioC] Anyone Know how to make a fake CEL file?
Rafael A. Irizarry
- [BioC] Note: No specified download type, defaulting to Source
Robert Gentleman
- [BioC] Setting the spacing between duplicates in limmaGUI
Peter Baker (CMIS, St Lucia)
- [BioC] Setting the spacing between duplicates in limmaGUI
Gordon Smyth
- [BioC] prova
utepandragon at tiscali.it
- [BioC] filter microarray data
utepandragon at tiscali.it
- [BioC] filter microarray data
James MacDonald
- [BioC] Clustering method
s0uchi02
- [BioC] Anyone Know how to make a fake CEL file?
Park, Richard
- [BioC] error message from read.marrayInfo
yjli
- [BioC] The upcoming release: how you might be able to help
A.J. Rossini
- [BioC] RMA and GeneCluster
Huang, Mingqian
- [BioC] Anyone Know how to make a fake CEL file?
Johannes Freudenberg
- [BioC] error message from read.marrayInfo
Jean Yee Hwa Yang
- [BioC] RMA and GeneCluster
James MacDonald
- [BioC] limmaGUI: Warning: ActiveTcl could not be found....
Marcelo Luiz de Laia
- [BioC] limmaGUI: Warning: ActiveTcl could not be found....
A.J. Rossini
- [BioC] error when trying to load the affy library
William Kenworthy
- [BioC] limmaGUI: Warning: ActiveTcl could not be found....
Marcelo Luiz de Laia
- [BioC] Statisticians - Genome Institute of Singapore
Adaikalavan RAMASAMY
- [BioC] Have the following error message while library(Biobase)!
=?big5?B?sKilycXv?=
- [BioC] error when trying to load the affy library
James MacDonald
- [BioC] Data analysis
Jason Skelton
- [BioC] very small fold change from RMA data
Dapeng Cui
- [BioC] Have the following error message while
library(Biobase)!
James MacDonald
- [BioC] Cannot update from Repos
Arne.Muller at aventis.com
- [BioC] very small fold change from RMA data
w.huber at dkfz-heidelberg.de
- [BioC] Help: redLines error when using widget.marrayRaw()
ying chen
- [BioC] limmaGUI: Warning: ActiveTcl could not be found...
James Wettenhall
- [BioC] limmaGUI: Warning: ActiveTcl could not be found...
James Wettenhall
- [BioC] Data analysis
Gordon Smyth
- [BioC] limmaGUI: Warning: ActiveTcl could not be found...
Marcelo Luiz de Laia
- [BioC] limmaGUI: Input files question!
Marcelo Luiz de Laia
- [BioC] limmaGUI: Input files question!
A.J. Rossini
- [BioC] Question
Pratima R Naik
- [BioC] Position in Biostatistics and Bioinformatics
Sophie Gallina
- [BioC] getBioC(relLevel="devel") fails under r-devel
Douglas Bates
- [BioC] getBioC(relLevel="devel") fails under r-devel
Jeff Gentry
- [BioC] Win32 packages
Jeff Gentry
- [BioC] getBioC(relLevel="devel") fails under r-devel
Douglas Bates
- [BioC] Error message with ReadAffy
Xuejun Peng
- [BioC] Error message with ReadAffy
Dasgupta, Abhijit (NIH/NCI)
- [BioC] read subset of affy data
Xuejun Peng
- [BioC] Problems with GCOS and affy
Tan, MinHan
- [BioC] Problems with GCOS and affy
Ben Bolstad
- [BioC] Error message with ReadAffy
Laurent Gautier
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] read subset of affy data
Laurent Gautier
- [BioC] read subset of affy data
James MacDonald
- [BioC] read subset of affy data
Rafael A. Irizarry
- [BioC] read subset of affy data
Rafael A. Irizarry
- [BioC] (no subject)
Treszl, Andras
- [BioC] limmaGUI: Input files question!
James Wettenhall
- [BioC] How to do normalization without background subtraction in
limmaGUI or limma?
ying chen
- [BioC] affy 1.3.23 Win32 - missing all.rda?
James Wettenhall
- [BioC] How to do normalization without background
subtraction in limmaGUI or limma?
Gordon Smyth
- [BioC] How to do normalization without background subtraction
in limmaGUI or limma?
James Wettenhall
- [BioC] How to do normalization without backgroundsubtraction in
limmaGUI or limma?
ying chen
- [BioC] limma, imagene analysis
Karin Lemuth
- [BioC] Type III Sum of Squares Calculation
Subramanian Karthikeyan
- [BioC] limma, imagene analysis
James MacDonald
- [BioC] Error with ImaGene out put file in limma
Marcelo Luiz de Laia
- [BioC] Error with ImaGene out put file in limma
Gordon Smyth
- [BioC] Error with ImaGene out put file in limma
Gordon Smyth
- [BioC] Help
pratima naik
- [BioC] Help
pratima naik
- [BioC] Type III Sum of Squares Calculation
Man, Michael
- [BioC] Install issues
Kasper Daniel Hansen
- [BioC] Install issues
Kasper Daniel Hansen
- [BioC] Design Matrix Question
Jason Skelton
- [BioC] Install issues
Jeff Gentry
- [BioC] Design Matrix Question
Kenny Ye
- [BioC] RE: Bioconductor Digest, Vol 8, Issue 34
Baker, Stephen
- [BioC] Design Matrix Question
Jason Skelton
- [BioC] Design Matrix Question
Gordon K Smyth
- [BioC] Affy Question
Jason Skelton
- [BioC] Error with ImaGene out put file in limma
Marcelo Luiz de Laia
- [BioC] Error with ImaGene out put file in limma
Pete
- [BioC] Design Matrix Question
Kenny Ye
- [BioC] Type III Sum of Squares Calculation
Subramanian Karthikeyan
- [BioC] Help
Jean Yee Hwa Yang
- [BioC] microarray data representation
Caroline Johnston
- [BioC] microarray data representation
Park, Richard
- [BioC] Affy Question
James MacDonald
- [BioC] Error with ImaGene out put file in limma
Marcelo Luiz de Laia
- [BioC] Error with ImaGene out put file in limma
Gordon K Smyth
- [BioC] Design Matrix Question
Gordon K Smyth
- [BioC] Error with ImaGene out put file in limma
Marcelo Luiz de Laia
- [BioC] Design Matrix Question
Kenny Ye
- [BioC] Webpage issues?
Jonathan R. Wallace
- [BioC] Webpage issues?
Jeff Gentry
- [BioC] installation problems
Yectli A Huerta
- [BioC] Webpage issues?
Jeff Gentry
- [BioC] dye swap vs. control channel
Isaac Mehl
- [BioC] dye swap vs. control channel
A.J. Rossini
- [BioC] Help using annotation data without explicitly building data
package
Sean Davis
- [BioC] Begginig doubts about layout and toptable
Marcelo Luiz de Laia
- [BioC] Begginig doubts about layout and toptable
Pete
- [BioC] Type III Sum of Squares Calculation
Man, Michael
- FW: [BioC] Type III Sum of Squares Calculation
Man, Michael
- [BioC] Help using annotation data without explicitly building
data package
Vincent Carey 525-2265
- [BioC] [BioCBUG] second announcement of Boston BioC users group Nov
7 2003
Vincent Carey 525-2265
- [BioC] Remove some genes from analysis in limma package? Is it
possible?
Marcelo Luiz de Laia
- [BioC] Interpreting results...
Marcelo Luiz de Laia
- [BioC] Remove some genes from analysis in limma package? Is it
possible?
James Wettenhall
- [BioC] Interpreting results...
James Wettenhall
- [BioC] ImaGene - Data analysis
Karin Lemuth
- [BioC] Limma Vs Imagene?
utepandragon at tiscali.it
- [BioC] dye swap vs. control channel
Ramon Diaz-Uriarte
- [BioC] dye swap vs. control channel
Fatima Sanchez Cabo
- [BioC] PROBLEMS WITH getBioC function
Stephen Moore
- [BioC] PROBLEMS WITH getBioC function
michael watson (IAH-C)
- [BioC] PROBLEMS WITH getBioC function
Kasper Daniel Hansen
- [BioC] Error while loading Biobase
Chevreux, Bastien {VFB~Kaiseraugst}
- [BioC] Re: [R] problems with Affy
James MacDonald
- [BioC] Error while loading Biobase
James MacDonald
- [BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
- [BioC] Remove some genes from analysis in limma package? Is it
possible?
Marcelo Luiz de Laia
- [BioC] Problems with golubEsets dataset
=?GB2312?Q?=CD=F5=CE=BA=C7=BF?=
- [BioC] Finding Out the Fold Changes
Sachin Mathur
- [BioC] Limma & Imagene
cv.vc
- [BioC] URLs in annotate
Sean Davis
- [BioC] mas5calls
Arne.Muller at aventis.com
- [BioC] Finding Out the Fold Changes
James MacDonald
- [BioC] mas5calls
Rafael A. Irizarry
- [BioC] Limma & Imagene
James MacDonald
- [BioC] Limma & Imagene
w.huber at dkfz-heidelberg.de
- [BioC] u95a and u95av2
Stephen Henderson
- [BioC] Limma & Imagene
Marcelo Luiz de Laia
- [BioC] u95a and u95av2
w.huber at dkfz-heidelberg.de
- [BioC] Venn Diagrams in Limma
Jason Skelton
- [BioC] u95a and u95av2
Ben Bolstad
- [BioC] Finding Out the Fold Changes
Sachin Mathur
- [BioC] Finding Out the Fold Changes
James MacDonald
- [BioC] Finding Out the Fold Changes
Robert Gentleman
- [BioC] Finding Out the Fold Changes
James MacDonald
- [BioC] citations
Akil Merchant
- [BioC] Error in validityMethod(object): No slot of name
"phenoLabels" for this object o
Suresh Kumar Karanam
- [BioC] Limma analysis
Pete
- [BioC] Venn Diagrams in Limma
Gordon Smyth
- [BioC] Limma analysis
Gordon Smyth
- [BioC] problems with affy package
Stephen Moore
- [BioC] problems with affy package
w.huber at dkfz-heidelberg.de
- [BioC] Venn Diagrams in Limma
Jason Skelton
- [BioC] option rm.mask=TRUE in ReadAffy
weiss
- [BioC] Venn Diagrams in Limma
Gordon Smyth
- Within array replicates in Limma, was: [BioC] Data analysis
Gordon Smyth
- [BioC] option rm.mask=TRUE in ReadAffy
Laurent Gautier
- [BioC] 3' 5' ratio
Sylvia Merk
- [BioC] Error in validityMethod(object): No slot of
name"phenoLabels" for this object o
James MacDonald
- [BioC] 3' 5' ratio
Crispin Miller
- [BioC] 3' 5' ratio
James MacDonald
- [BioC] 3' 5' ratio
Crispin Miller
- [BioC] annotate installation problem
LIANHE SHAO
- [BioC] Failure to install genefilter,
multtest and affy in RAqua on Mac OS X
Paul Dickinson
- [BioC] annotate installation problem
A.J. Rossini
- [BioC] Failure to install genefilter, multtest and affy in
RAqua on Mac OS X
A.J. Rossini
- [BioC] calculate interaction between aminoacids residues
Fabien Crozet
- [BioC] calculate interaction between aminoacids residues
A.J. Rossini
- [BioC] calculate interaction between aminoacids residues
Junwen wang
- [BioC] Error in validityMethod(object): No slot of
name"phenoLabels" for this object o
Robert Gentleman
- [BioC] Installing metadata packages..
Samuel Lattimore
- [BioC] calculate interaction between aminoacids residues
w.huber at dkfz-heidelberg.de
- [BioC] how do people handling outliers and masked oligos?
weiss
- [BioC] calculate interaction between aminoacids residues
Aedin Culhane
- [BioC] how do people handling outliers and masked oligos?
Ben Bolstad
- [BioC] calculate interaction between aminoacids residues
A.J. Rossini
- [BioC] Installing metadata packages..
James MacDonald
- [BioC] calculate interaction between aminoacids residues
Junwen wang
- [BioC] Error in load VSN library
James MacDonald
- [BioC] Error in load VSN library
Marcelo Luiz de Laia
- [BioC] Error in load VSN library
w.huber at dkfz-heidelberg.de
- [BioC] Error in load VSN library
Marcelo Luiz de Laia
- [BioC] Error in load VSN library
James MacDonald
- [BioC] Heatmap function
Marcus
- [BioC] Heatmap function
Furge, Kyle
- [BioC] Creating an new exprSet
Marcelo Luiz de Laia
- [BioC] Trouble getting started with Bioconductor
Paul Cantalupo
- [BioC] Trouble getting started with Bioconductor
w.huber at dkfz-heidelberg.de
- [BioC] Release of Bioconductor 1.3
A.J. Rossini
- [BioC] a special thanks
A.J. Rossini
- [BioC] Creating an new exprSet
Rafael A. Irizarry
- [BioC] Limma analysis
Pete
- [BioC] Limma analysis
Gordon Smyth
- Fwd: Re: Fwd: RE: [BioC] Heatmap function
Marcus
- Fwd: Re: Fwd: Re: [BioC] Heatmap function
Marcus
- [BioC] Creating an new exprSet
Marcelo Luiz de Laia
- [BioC] Hi memory usage...problems
Victor M Trevino-Alvarado
- [BioC] (no subject)
William Kenworthy
- [BioC] option rm.mask=TRUE in ReadAffy
t-kawai at hhc.eisai.co.jp
- [BioC] Error using widget.marrayRaw() in library (marrayInput)
Casper Frederiksen
- [BioC] option rm.mask=TRUE in ReadAffy
Laurent Gautier
- [BioC] Occasional seg faults in RMA
Crispin Miller
- [BioC] Problem-Help
Caroline TRUNTZER
- [BioC] Clustering function
Jason Skelton
- [BioC] Occasional seg faults in RMA
Matloob Qureshi
- [BioC] Occasional seg faults in RMA
Ben Bolstad
- [BioC] help w/ bg.correct.gcrma
Jenny Drnevich
- [BioC] help w/ bg.correct.gcrma
FCollin at genelogic.com
- [BioC] CHRLOC data
Johannes Hüsing
Last message date:
Fri Oct 31 23:14:12 MEST 2003
Archived on: Wed Jan 28 23:04:05 MEST 2004
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