[BioC] Interpreting results...

[Marcelo Luiz de Laia]

Hi everyone.

I have the following layout:

SlideNamber	FileNameCy3	FileNameCy5	Cy3	Cy5
1	lamina1_1_selected.txt	lamina1_0_selected.txt	BCYE	XDM
2	lamina2_1_selected.txt	lamina2_0_selected.txt	XDM	BCYE
3	lamina3_1_selected.txt	lamina3_0_selected.txt	XDM	BCYE

And I have these results (fictitious):

.Field	Meta.Row	Meta.Column	Row
4432	XDM/BCYE	3	2	25
2955	XDM/BCYE	2	2	28
5203	XDM/BCYE	4	1	25
4510	XDM/BCYE	3	2	28
1533	XDM/BCYE	1	2	32
4562	XDM/BCYE	3	2	31
5137	XDM/BCYE	4	1	23

Column	Gene.ID	M	t	P.Value	B
16	SemP01	-3.00	-61.01	0.00	7.96
3	ty0012	-2.83	-51.54	0.00	7.78
19	SemP08	-2.73	-51.46	0.00	7.71
22	SemP12	-3.55	-51.35	0.00	7.62
21	ty2196	-3.97	-41.90	0.00	5.68
2	SemP38	-2.60	-41.70	0.00	5.48
1	ty0559	1.66	41.09	0.00	5.03

Which is the interpretation for the gene 4432? Inside of this layout it was
up or down regulated?

And the gene 5237? Was it up or down?

Thanks very much

Marcelo
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