[BioC] Venn Diagrams in Limma

Jason Skelton jps at sanger.ac.uk
Mon Oct 27 18:14:34 MET 2003

Hi All...............

I have a couple of questions about the venn diagrams options in Limma

Once you have obtained your venn diagram how can you "identify" or make 
lists of genes from the different venn components ?

I'd also like to be able to use the false discovery rate option that can 
beused in classifyTestsP method for my venn diagram but I also want to 
use data that I've received from makeContrasts and contrast.fit which I 
can only use in classifyTests but I can't use "fdr" in that function....

Is there a particular reason why I can't do this ?

I've searched the Bioconductor mailing list but can't find any info on this.



Jason Skelton
Pathogen Microarrays
Wellcome Trust Sanger Institute
CB10 1SA

Tel +44(0)1223 834244 Ext 7123
Fax +44(0)1223 494919

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