[BioC] Venn Diagrams in Limma

[Jason Skelton]

Hi All...............


I have a couple of questions about the venn diagrams options in Limma

1)
Once you have obtained your venn diagram how can you "identify" or make 
lists of genes from the different venn components ?


2)
I'd also like to be able to use the false discovery rate option that can 
beused in classifyTestsP method for my venn diagram but I also want to 
use data that I've received from makeContrasts and contrast.fit which I 
can only use in classifyTests but I can't use "fdr" in that function....

Is there a particular reason why I can't do this ?

I've searched the Bioconductor mailing list but can't find any info on this.

Thanks

Jason

-- 
--------------------------------
Jason Skelton
Pathogen Microarrays
Wellcome Trust Sanger Institute
Hinxton
Cambridge
CB10 1SA

Tel +44(0)1223 834244 Ext 7123
Fax +44(0)1223 494919