[BioC] Venn Diagrams in Limma
jps at sanger.ac.uk
Mon Oct 27 18:14:34 MET 2003
I have a couple of questions about the venn diagrams options in Limma
Once you have obtained your venn diagram how can you "identify" or make
lists of genes from the different venn components ?
I'd also like to be able to use the false discovery rate option that can
beused in classifyTestsP method for my venn diagram but I also want to
use data that I've received from makeContrasts and contrast.fit which I
can only use in classifyTests but I can't use "fdr" in that function....
Is there a particular reason why I can't do this ?
I've searched the Bioconductor mailing list but can't find any info on this.
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