[BioC] installation problem

[Weiming Zhang]

Hi,

Problem solved. I changed linux kernel-headers from 2.4.20 to 2.4.9 and
it worked.

Thank you all for the help, especially Robert.

Weiming

On Mon, 2003-10-06 at 20:21, Vincent Carey 525-2265 wrote:
> >                  from common.h:10,
> >                  from Rgraphviz.c:1:
> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
> > directory
> > In file included from Rgraphviz.c:1:
> > common.h:19:20: render.h: No such file or directory
> > common.h:20:19: graph.h: No such file or directory
> > common.h:21:22: dotprocs.h: No such file or directory
> > common.h:22:24: neatoprocs.h: No such file or directory
> > common.h:23:20: adjust.h: No such file or directory
> > Rgraphviz.c:2:20: circle.h: No such file or directory
> 
> these errors suggest that the graphviz installation from
> RPM is not supporting development level resources.
> 
> > -IboostIncl -ftemplate-depth-30 -fPIC  -g -O2 -c bfsBGL.cpp -o bfsBGL.o
> > In file included from /usr/include/bits/posix1_lim.h:126,
> >                  from /usr/include/limits.h:144,
> >                  from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:130,
> >                  from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/syslimits.h:7,
> >                  from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:11,
> >                  from boostIncl/boost/config/suffix.hpp:26,
> >                  from boostIncl/boost/config.hpp:57,
> >                  from RBGL.h:4,
> >                  from bfsBGL.cpp:5:
> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
> 
> these errors suggest inadequacy of your linux installation.
> the missing files are basic development resources.  you may
> have chosen an "end-user-only" distribution, or the linux
> installation is nonstandard.
> 
> are you able to build R from source?  i suspect not.
>