[BioC] "Rgraphviz" installation problem
Martin Maechler
maechler at stat.math.ethz.ch
Wed Oct 8 13:19:12 MEST 2003
>>>>> "Weiming" == Weiming Zhang <Weiming.Zhang at uchsc.edu>
>>>>> on 07 Oct 2003 10:52:06 -0600 writes:
Weiming> Hi,
Weiming> Problem solved. I changed linux kernel-headers from 2.4.20 to 2.4.9 and
Weiming> it worked.
Weiming> Thank you all for the help, especially Robert.
Interesting.... but quite problematic, since 2.4.20 is not a beta Linux kernel
but a "production" one, and a very widely used one too:
Redhat 9's kernel (at least here) *is* 2.4.20.
So I assume the graphviz need to be
notified about this as well, right?
Martin
Weiming> On Mon, 2003-10-06 at 20:21, Vincent Carey 525-2265 wrote:
>> > from common.h:10,
>> > from Rgraphviz.c:1:
>> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
>> > directory
>> > In file included from Rgraphviz.c:1:
>> > common.h:19:20: render.h: No such file or directory
>> > common.h:20:19: graph.h: No such file or directory
>> > common.h:21:22: dotprocs.h: No such file or directory
>> > common.h:22:24: neatoprocs.h: No such file or directory
>> > common.h:23:20: adjust.h: No such file or directory
>> > Rgraphviz.c:2:20: circle.h: No such file or directory
>>
>> these errors suggest that the graphviz installation from
>> RPM is not supporting development level resources.
>>
>> > -IboostIncl -ftemplate-depth-30 -fPIC -g -O2 -c bfsBGL.cpp -o bfsBGL.o
>> > In file included from /usr/include/bits/posix1_lim.h:126,
>> > from /usr/include/limits.h:144,
>> > from
>> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:130,
>> > from
>> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/syslimits.h:7,
>> > from
>> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:11,
>> > from boostIncl/boost/config/suffix.hpp:26,
>> > from boostIncl/boost/config.hpp:57,
>> > from RBGL.h:4,
>> > from bfsBGL.cpp:5:
>> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
>>
>> these errors suggest inadequacy of your linux installation.
>> the missing files are basic development resources. you may
>> have chosen an "end-user-only" distribution, or the linux
>> installation is nonstandard.
>>
>> are you able to build R from source? i suspect not.
>>
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