[BioC] installation problem
Weiming Zhang
Weiming.Zhang at uchsc.edu
Tue Oct 7 16:30:09 MEST 2003
Thank you for replying.
I did build R 1.7.1 from source without problem on my workstation. It is
strange that I also built a lot other C programs without trouble.
Weiming
On Mon, 2003-10-06 at 20:21, Vincent Carey 525-2265 wrote:
> > from common.h:10,
> > from Rgraphviz.c:1:
> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
> > directory
> > In file included from Rgraphviz.c:1:
> > common.h:19:20: render.h: No such file or directory
> > common.h:20:19: graph.h: No such file or directory
> > common.h:21:22: dotprocs.h: No such file or directory
> > common.h:22:24: neatoprocs.h: No such file or directory
> > common.h:23:20: adjust.h: No such file or directory
> > Rgraphviz.c:2:20: circle.h: No such file or directory
>
> these errors suggest that the graphviz installation from
> RPM is not supporting development level resources.
>
> > -IboostIncl -ftemplate-depth-30 -fPIC -g -O2 -c bfsBGL.cpp -o bfsBGL.o
> > In file included from /usr/include/bits/posix1_lim.h:126,
> > from /usr/include/limits.h:144,
> > from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:130,
> > from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/syslimits.h:7,
> > from
> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:11,
> > from boostIncl/boost/config/suffix.hpp:26,
> > from boostIncl/boost/config.hpp:57,
> > from RBGL.h:4,
> > from bfsBGL.cpp:5:
> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
>
> these errors suggest inadequacy of your linux installation.
> the missing files are basic development resources. you may
> have chosen an "end-user-only" distribution, or the linux
> installation is nonstandard.
>
> are you able to build R from source? i suspect not.
>
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