[BioC] installation problem

[Vincent Carey 525-2265]

>                  from common.h:10,
>                  from Rgraphviz.c:1:
> /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
> directory
> In file included from Rgraphviz.c:1:
> common.h:19:20: render.h: No such file or directory
> common.h:20:19: graph.h: No such file or directory
> common.h:21:22: dotprocs.h: No such file or directory
> common.h:22:24: neatoprocs.h: No such file or directory
> common.h:23:20: adjust.h: No such file or directory
> Rgraphviz.c:2:20: circle.h: No such file or directory

these errors suggest that the graphviz installation from
RPM is not supporting development level resources.

> -IboostIncl -ftemplate-depth-30 -fPIC  -g -O2 -c bfsBGL.cpp -o bfsBGL.o
> In file included from /usr/include/bits/posix1_lim.h:126,
>                  from /usr/include/limits.h:144,
>                  from
> /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:130,
>                  from
> /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/syslimits.h:7,
>                  from
> /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:11,
>                  from boostIncl/boost/config/suffix.hpp:26,
>                  from boostIncl/boost/config.hpp:57,
>                  from RBGL.h:4,
>                  from bfsBGL.cpp:5:
> /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or

these errors suggest inadequacy of your linux installation.
the missing files are basic development resources.  you may
have chosen an "end-user-only" distribution, or the linux
installation is nonstandard.

are you able to build R from source?  i suspect not.