[BioC] Affy: Present calls in an eset
Arne.Muller at aventis.com
Arne.Muller at aventis.com
Wed Oct 8 15:54:56 MEST 2003
Hello,
I'm quite new to Bioconductor/affy, and I was wondering if there's a simple
way to include the absent/present call for a gene in the outputfile generated
with write.exprs(eset, file='boo') in theaffy package.
the eset was generated with
eset <- expresso(cel, bgcorrect.method = 'rma', normalize.method =
'qspline', pmcorrect.method = 'pmonly',
summary.method='liwong')
For further analyses I'd like to exclude genes that are absent in all chips.
thanks a lot for your help,
Arne
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