[BioC] filter microarray data

James MacDonald jmacdon at med.umich.edu
Wed Oct 15 14:53:00 MEST 2003

AFAIK, com.braju.sma is not part of Bioconductor. If you need help, you
might contact Henrik Bengtsson, who wrote this package, or look at his
help page.



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109

>>> <utepandragon at tiscali.it> 10/15/03 07:39AM >>>
Dear all,
I have problems with some of my microarray data (i use com.braju.sma
for R)...
I am using ImaGene .txt files for two colour chips.
If anyone is so kind to explain me how:

1.- to extract the signal from Arabidopsis gene raws without extract
signal from my slide

2.- to remove bad flagged genes from my dataset.

Thanks ever so much for your help.

Cristian T,
S.Orsola Hospital
Bologna- Italy
Telefono/Phone: +390516363791
Fax: +390516363791

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