[BioC] gcrma bug fixed--currently available from CVS

[Wei, Wenbin]

Hi, all, 

I would like to install gcrma on my PC but have not got a clue how to do
that after downloading it from the provided link. Please give me some help.

Cheers,

Dr. Wenbin Wei
Division of Cancer Studies
University of Birmingham
Birmingham,
B15 2TT


-----Original Message-----
From: Zhijin Wu [mailto:zwu at jhsph.edu] 
Sent: 15 September 2003 21:58
To: Zhijin Wu
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] gcrma bug fixed--currently available from CVS

Sorry I didn't make it clear..
currently you will need to get it from the "developer page" link from
bioconductor (at the bottom of the menu, or

http://franz.stat.wisc.edu/cgi-bin/viewcvs.cgi/Rpacks/gcrma/?cvsroot=Biocond
uctor



On Mon, 15 Sep 2003, Zhijin Wu wrote:

> We've just updated the gcrma package. The bug due to sequence
> matching mistake has been fixed.
> Thanks to Akil Merchant and Michael McDonald who brought it to our
> attention, and thank Wolfgang for explaining the precise way of matching
> those!
> 
> Jean
> On Mon, 15 Sep 2003, Michael McDonald wrote:
> 
> > Hello,
> > Does anyone know why gcrma wouldn't work with the moe chips when it 
> > works for the mgu74av2 chipset? Any input is appreciated.  the output 
> > is:
> > WORKS!
> >  > gcrmadata<-gcrma(gcdata)
> > Loading required package: mgu74av2probe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...done.
> > 12488 ids to be processed
> > .........
> > 
> > 
> > ????
> >  > gcrmadata<-gcrma(data)
> > Loading required package: moe430bprobe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign function 
> > call (arg 1)
> > 
> > best,
> > michael
> > 
> > Michael J. McDonald Ph.D.
> > Universite de Geneve c/o Duboule Lab
> > Department of Zoologie and Biologie Animale
> > Quai Ernest-Ansermet 30
> > CH-1211 Geneve 4
> > phone 41.22.379.67.94
> > fax	   41.22.379.67.95
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
> > 
> 
>

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