[BioC] option rm.mask=TRUE in ReadAffy

[weiss]

Hi everybody,

when I set  options    rm.mask=TRUE , rm.outlier=TRUE
in the ReadAffy() routine

and then use

expresso(data, bgcorrect.method="rma",normalize.method="quantiles",
pmcorrect.method="pmonly",summary.method="medianpolish")

I get thousands of messages
"Error in if (converged) break : missing value where TRUE/FALSE needed"

and no expression values different from NA.

Does anybody know how to remove msked and outlier oligos from the analysis?

Thanks, Gunter