[BioC] Limma & Imagene
Marcelo Luiz de Laia
mlaia at fcav.unesp.br
Mon Oct 27 17:30:01 MET 2003
Hi,
Your steps are:
library(limma)
>
YourSample<-read.table("TargetsSampleTarget.txt",header=TRUE,sep="\t",as.is=
TRUE)
> slides<-cbind(YourSample$FileNameCy3, YourSample$FileNameCy5)
> RG<-read.maimages(slides, source="imagene")
.
.
.
Marcelo
> > library(limma)
> >
>
> > YourSample
> SlideNumber FileNameCy3 FileNameCy5 Cy3 Cy5
> 1 1 1.txt 2.txt treated untreated
> 2 2 3.txt 4.txt treated untreated
> 3 3 5.txt 6.txt treated untreated
> > RG<-read.maimages(slides, source="imagene")
> Error in match.arg(source, c("spot", "spot.close.open", "genepix",
> "quantarray")) :
> ARG should be one of spot, spot.close.open, genepix, quantarray
>
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