March 2005 Archives by author

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Starting: Tue Mar 1 00:03:54 CEST 2005
Ending: Thu Mar 31 23:46:11 CEST 2005
Messages: 469

• [BioC] RE: Problem about proxy in linux   michael watson (IAH-C)
• [BioC] [marray] Importing SMD files into marray   michael watson (IAH-C)
• [BioC] PDNN compatibility with RAE230A   Jordi Altirriba Gutiérrez
• [BioC] Problem whith Rgraphviz   Sylvain Brohée
• [BioC] AffyBatch: Replacing probe set IDs with Genebank   Aedin
• [BioC] turning cluster trees upside down   Naomi Altman
• [BioC] turning cluster trees upside down   Naomi Altman
• [BioC] LIMMA vs. dChip   Naomi Altman
• [BioC] limma, subsets of design matrix and p-values   Naomi Altman
• [BioC] LIMMA vs. dChip   Naomi Altman
• [BioC] design in mixed ref and dye-swap experiment   Naomi Altman
• [BioC] followup on reading RNA digestion plots   Naomi Altman
• [BioC] SAM vs LIMMA vs EBAM   Naomi Altman
• [BioC] SAM vs LIMMA vs EBAM   Naomi Altman
• [BioC] unable to connect Bioconductor website from R!   Ashish Anand
• [BioC] unable to connect Bioconductor website from R!   Ashish Anand
• [BioC] getBioC and install.packages2 fail   Arne.Muller at sanofi-aventis.com
• [BioC] getBioC and install.packages2 fail   Arne.Muller at sanofi-aventis.com
• [BioC] getBioC and install.packages2 fail   Arne.Muller at sanofi-aventis.com
• [BioC] problem in knn {EMV}   Alice Le Bars
• [BioC] turning cluster trees upside down   Douglas Bates
• [BioC] Rdbi.PgSQL   Douglas Bates
• [BioC] hgu133plus2SYMBOL missing an entry for 211506_s_at   Dick Beyer
• [BioC] What are the justPlier 4 processing steps?   Dick Beyer
• [BioC] Removing bad probesets   Ben Bolstad
• [BioC] Question about using ReadAffy() to read CEL files   Ben Bolstad
• [BioC] Question about using ReadAffy() to read CEL files   Ben Bolstad
• [BioC] [BioC}: export Hopoah to treeview   Anthony Bosco
• [BioC] limma Toptable   Anthony Bosco
• [BioC] PAM error   Anthony Bosco
• [BioC] RT-PCR normalization & stats reference   Anthony Bosco
• [BioC] bioconductor and ESS   Patrick Brown
• [BioC] bioconductor and ESS   Patrick Brown
• [BioC] bioconductor and ESS   Patrick Brown
• [BioC] Partial F-test using LIMMA   Jenny Bryan
• [BioC] help in arrayMagic?   Andreas Buness
• [BioC] mouse 430v2 annotation "404" error   Anand C.Patel
• [BioC] simpleaffy finds QC problem, now what?   Anand C.Patel
• [BioC] Problem with ABPkgBuilder function   Raffaele Calogero
• [BioC] loading the Agilent data   Mi Sook Chang
• [BioC] Building probe package   Wenqiong Chen
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] Problem about proxy in linux   Cheng, Bu Qi
• [BioC] RE: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] RE: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] Recall: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] Recall: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] Recall: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] RE: Problem about proxy in linux   Cheng, Bu Qi
• [BioC] Problem about proxy in linux   Cheng, Bu Qi
• [BioC] Questions on the typical algorithms or solution in most scientific computation area   Cheng, Bu Qi
• [BioC] simpleaffy function detection.p.value (and affy function mas5call s?)   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] simpleaffy function detection.p.value - bug   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] simpleaffy function detection.p.value - bug solved in version 2.10   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Detection call for Hu6800   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] annotaion in bioconductor   Colantuoni, Carlo (NIH/NIMH)
• [BioC] Time course experiment in Limma   Cornell, John E
• [BioC] Generic Loess Normalization   Gene Cutler
• [BioC] GOstats question   Rickman David
• [BioC] GOstats question   Rickman David
• [BioC] GOstats question   Rickman David
• [BioC] help wiht aCGH   Sean Davis
• [BioC] object programming problem   Sean Davis
• [BioC] help needed for aCGH package   Sean Davis
• [BioC] plotting with log(x) values   Sean Davis
• [BioC] AffyBatch: Replacing probe set IDs with Genebank Accesion numbers?   Sean Davis
• [BioC] single color microarray analysis   Sean Davis
• [BioC] Generic Loess Normalization   Sean Davis
• [BioC] Plotting Gene Expression Values   Sean Davis
• [BioC] GOHyperG pvalue and expression value,   Sean Davis
• [BioC] help for Mega2   Sean Davis
• [BioC] asking for some code   Sean Davis
• [BioC] finding and averaging replicate gene records   Sean Davis
• [BioC] finding and averaging replicate gene records   Sean Davis
• [BioC] finding and averaging replicate gene records   Sean Davis
• [BioC] RGList/MAList--extending subsetting behavior   Sean Davis
• [BioC] Rdbi.PgSQL   Sean Davis
• [BioC] Error: couldn't find function "hgu133aACCNUM"   Sean Davis
• [BioC] Rdbi.PgSQL   Sean Davis
• [BioC] self-self hybridization and limma   Sean Davis
• [BioC] Detecting overrepresented genomic loci   Sean Davis
• [BioC] GOstats question   Sean Davis
• [BioC] GOstats question   Sean Davis
• [BioC] MA plot to pdf in limma   Sean Davis
• [BioC] GOstats question   Sean Davis
• [BioC] MAGE-ML reading   Sean Davis
• [BioC] ellipse package   Sean Davis
• [BioC] Trouble using GOstats   Sean Davis
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Kevin Dawson
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Kevin Dawson
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Kevin Dawson
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Kevin Dawson
• [BioC] Convert (altcdfenvs)CdfEnvAffy object to useable cdf package   Rhonda DeCook
• [BioC] problem with GEO site   Guillaume Deplaine
• [BioC] ReadAffy and hist() labels   Hrishikesh Deshmukh
• [BioC] ReadAffy and hist() labels   Hrishikesh Deshmukh
• [BioC] Large number of CEL files!!!   Hrishikesh Deshmukh
• [BioC] Summary Statistics   Hrishikesh Deshmukh
• [BioC] Order in which ReadAffy() and read.affybatch()   Hrishikesh Deshmukh
• [BioC] boxplot   Hrishikesh Deshmukh
• [BioC] Order in which ReadAffy() and read.affybatch()   Hrishikesh Deshmukh
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] qqplot   Hrishikesh Deshmukh
• [BioC] qqplot   Hrishikesh Deshmukh
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] simpleaffy   Hrishikesh Deshmukh
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] Question about Probes   Hrishikesh Deshmukh
• [BioC] numbers for sequence and probenames   Hrishikesh Deshmukh
• [BioC] numbers for sequence and probenames   Hrishikesh Deshmukh
• [BioC] Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"   Noam Drigues
• [BioC] Large number of CEL files!!!   Steffen Durinck
• [BioC] library(gregmisc)   E Motakis, Mathematics
• [BioC] Bioconductor Short Course   Elena.Brini at serono.com
• [BioC] HG-U133A-tag   Mohammad Esad-Djou
• [BioC] HG-U133A-tag   Mohammad Esad-Djou
• [BioC] MAPlot   Mohammad Esad-Djou
• [BioC] MAPlot   Mohammad Esad-Djou
• [BioC] MAPlot   Mohammad Esad-Djou
• [BioC] installing packages in bioconductor   Seth Falcon
• [BioC] help needed for aCGH package   Seth Falcon
• [BioC] help for cluster   Seth Falcon
• [BioC] mouse 430v2 annotation "404" error   Seth Falcon
• [BioC] MetaData Package Availability   Seth Falcon
• [BioC] can't instal MetaData package "mouse4302"   Seth Falcon
• [BioC] hgu133plus2SYMBOL missing an entry for 211506_s_at   Seth Falcon
• [BioC] problem of downloading   Seth Falcon
• [BioC] broken links to metadata   Seth Falcon
• [BioC] MetaData packages online   Seth Falcon
• [BioC] error using humanLLMappingsACCNUM2LL   Seth Falcon
• [BioC] ReadAffy and hist() labels   Seth Falcon
• [BioC] Website outage notice: Wednesday, March 9 6:30-7:00 PST   Seth Falcon
• [BioC] bioconductor and ESS   Seth Falcon
• [BioC] Website outage notice: Wednesday, March 9 6:30-7:00 PST   Seth Falcon
• [BioC] annotaion in bioconductor   Seth Falcon
• [BioC] is yeast2cdf available?   Seth Falcon
• [BioC] New probe and cdf data packages posted   Seth Falcon
• [BioC] unable to connect Bioconductor website from R!   Seth Falcon
• [BioC] unable to re-install after interupted installation   Seth Falcon
• [BioC] unable to connect Bioconductor website from R!   Seth Falcon
• [BioC] can't instal MetaData package "mouse4302"   Seth Falcon
• [BioC] RE: Problem about proxy in linux   Seth Falcon
• [BioC] question about reading data into marray package   Seth Falcon
• [BioC] getBioC() doesn't work, download.file() and url() do   Seth Falcon
• [BioC] Problem about proxy in linux   Seth Falcon
• [BioC] Problem about proxy in linux   Seth Falcon
• [BioC] load AnnBuilder and install XML   Seth Falcon
• [BioC] [marray] Importing SMD files into marray   Seth Falcon
• [BioC] AnnBuilder questions...   Seth Falcon
• [BioC] Updated vignettes posted to website   Seth Falcon
• [BioC] missing probesets when creating cdf package with makecdfenv   Seth Falcon
• [BioC] Rdbi.PgSQL   Seth Falcon
• [BioC] suggestion : new object for exprSet   Seth Falcon
• [BioC] vennDiagram error: Error in toptable   Seth Falcon
• [BioC] Device question   Seth Falcon
• [BioC] R 2.0.1 Question   Seth Falcon
• [BioC] Problem about Affy   Seth Falcon
• [BioC] multtest dependencies   Seth Falcon
• [BioC] Bioconductor 1.6 Release Scheduel Announcement   Seth Falcon
• [BioC] getBioC and install.packages2 fail   Seth Falcon
• [BioC] getBioC and install.packages2 fail   Seth Falcon
• [BioC] MAPlot   Seth Falcon
• [BioC] problems using simpleaffy   Seth Falcon
• [BioC] numbers for sequence and probenames   Seth Falcon
• [BioC] getBioC and install.packages2 fail   Seth Falcon
• [BioC] Re: [R] Installing GO 1.7.0   Seth Falcon
• [BioC] Annotation data packages for Windows updated   Seth Falcon
• [BioC] gcrma and custom CDF files : how to make them work together?   Richard Finney
• [BioC] gcrma() and get()   Richard Finney
• [BioC] gcrma() and get() -- oops, 2nd try [sorry for 1st bogus send]   Richard Finney
• [BioC] boxplot   Richard Friedman
• [BioC] Detecting overrepresented genomic loci   Furge, Kyle
• [BioC] Help with LPE error message   Puhong Gao
• [BioC] MvA plotting error   Puhong Gao
• [BioC] Re: MvA plotting error   Puhong Gao
• [BioC] Comparision of expression values from 4 different studies   Margaret Gardiner-Garden
• [BioC] can't instal MetaData package "mouse4302"   Robert Gentleman
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Robert Gentleman
• [BioC] Detecting overrepresented genomic loci   Robert Gentleman
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Robert Gentleman
• [BioC] GOstats question   Robert Gentleman
• [BioC] Trouble using GOstats   Robert Gentleman
• [BioC] rationale behind getBioC script   Jeff Gentry
• [BioC] Problem whith Rgraphviz   Jeff Gentry
• [BioC] Geneplotter, alongChrom problem   Giulio Di Giovanni
• [BioC] Geneplotter, alongChrom problem solved   Giulio Di Giovanni
• [BioC] globaltest procedure   Goeman, J.J. (MSTAT)
• [BioC] help wiht aCGH   Alberto Goldoni
• [BioC] help for cluster   Alberto Goldoni
• [BioC] Fwd: help for cluster   Alberto Goldoni
• [BioC] help for Mega2   Alberto Goldoni
• [BioC] R 2.0.1 Question   Heather Good
• [BioC] Device question   Paul Grosu
• FW: [BioC] Device question   Paul Grosu
• [BioC] marrayQuality & marray : empty ?   Ghislaine Guigon
• [BioC] LocusLink now redirects to Entrez Gene   Ramsi Haddad
• [BioC] LocusLink now redirects to Entrez Gene   Ramsi Haddad
• [BioC] Trouble using GOstats   Ramsi Haddad
• [BioC] Trouble using GOstats   Ramsi Haddad
• [BioC] reposTool package: permission problems on liblisting.Rda file   Conrad Halling
• [BioC] RMA verse GCRMA, low intensity   Matthew Hannah
• [BioC] GCRMA: low intensity exprs estimates / pval distributions   Matthew Hannah
• [BioC] GCRMA: low intensity exprs estimates / pval distributions   Matthew Hannah
• [BioC] Order in which ReadAffy() and read.affybatch()   Matthew Hannah
• [BioC] p-value adjustment   Matthew Hannah
• [BioC] limma regression / fdr permutation correction   Matthew Hannah
• [BioC] object programming problem   Kasper Daniel Hansen
• [BioC] How to calculate Pearson coefficient between 2 genes in a group including 1500 genes?   Kasper Daniel Hansen
• [BioC] plotting with log(x) values   Kasper Daniel Hansen
• [BioC] image of an AffyBatch   Kasper Daniel Hansen
• [BioC] can't instal MetaData package "mouse4302"   Kasper Daniel Hansen
• [BioC] AffyBatch: Replacing probe set IDs with Genebank Accesion numbers?   Kasper Daniel Hansen
• [BioC] problem of downloading   Kasper Daniel Hansen
• [BioC] broken links to metadata   Kasper Daniel Hansen
• [BioC] image and AffyBatch   Kasper Daniel Hansen
• [BioC] asking for some code   Kasper Daniel Hansen
• [BioC] asking for some code   Kasper Daniel Hansen
• [BioC] suggestion : new object for exprSet   Kasper Daniel Hansen
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   Kasper Daniel Hansen
• FW: [BioC] Device question   Kasper Daniel Hansen
• [BioC] plate vs. pin-tip   Johanna Hardin
• [BioC] vennDiagram error: Error in toptable   Dennis Hazelett
• [BioC] vennDiagram error: Error in toptable   Dennis Hazelett
• [BioC] loess and duplicate correlation   Dennis Hazelett
• [BioC] loess and duplicate correlation   Dennis Hazelett
• [BioC] LIMMA: uneven replication of samples   Jakob Hedegaard
• [BioC] Partial F-test using LIMMA   David Henderson
• [BioC] LIMMA vs. dChip   Stephen Henderson
• [BioC] LIMMA vs. dChip   Stephen Henderson
• [BioC] No convergence in li wong fit   Ann Hess
• [BioC] RMA verse GCRMA   Fangxin Hong
• [BioC] RMA verse GCRMA   Fangxin Hong
• [BioC] RMA verse GCRMA   Fangxin Hong
• [BioC] RMA verse GCRMA, low intensity   Fangxin Hong
• [BioC] LIMMA vs. dChip   Fangxin Hong
• [BioC] A new package: RankProd   Fangxin Hong
• [BioC] variable "ygs98cdfSYMBOL" was not found   Shawn Hoon
• [BioC] Generic Loess Normalization   Wolfgang Huber
• [BioC] RMA verse GCRMA   Wolfgang Huber
• [BioC] bioconductor and ESS   Wolfgang Huber
• [BioC] plate vs. pin-tip   Wolfgang Huber
• [BioC] vsn: L-BFGS-B needs finite values of fn (was: help in arrayMagic?)   Wolfgang Huber
• [BioC] Geneplotter, alongChrom problem   Wolfgang Huber
• [BioC] numbers for sequence and probenames   Wolfgang Huber
• [BioC] ellipse package   Wolfgang Huber
• [BioC] RSJava on Windows   Wolfgang Huber
• [BioC] What do these headers mean?   Srinivas Iyyer
• [BioC] cDNA data to expression values   Srinivas Iyyer
• [BioC] Help with LPE error message   Jain, Nitin
• [BioC] LPE   Jain, Nitin
• [BioC] GOHyperG pvalue and expression value,   Saurin Jani
• [BioC] Problem whith Rgraphviz   Saurin Jani
• [BioC] extract genes from vennDiagram LIMMA ..How?,   Saurin Jani
• [BioC] problem with GEO site   Saurin D. Jani
• [BioC] paired experiments in limma   Pedro Jares
• [BioC] object programming problem   Ian Jeffery
• [BioC] Question about using ReadAffy() to read CEL files   Xiaoyu Jia
• [BioC] Question about using ReadAffy() to read CEL files   Xiaoyu Jia
• [BioC] Missing values and MAS5   Piotr K
• [BioC] Need your help on R & BioC exploration   Daniel Kang
• [BioC] Help on R & Bioconductor Explorer   Daniel Kang
• [BioC] Bioconductor book by Springer....   Khan, Sohail
• [BioC] Only one chip analysis...   Khan, Sohail
• [BioC] One chip analysis...   Khan, Sohail
• [BioC] Limma statistics documentation..   Khan, Sohail
• [BioC] Rggobi   Khan, Sohail
• [BioC] ProbeId to GenBank Accession..   Khan, Sohail
• [BioC] Error: couldn't find function "hgu133aACCNUM"   Khan, Sohail
• [BioC] XML under Debian   Jan T. Kim
• [BioC] getBioC() doesn't work, download.file() and url() do   Robert King
• [BioC] rma on new samples   Kuhn, Max
• [BioC] ellipse package   sachin Kumar
• [BioC] turning cluster trees upside down   Liaw, Andy
• [BioC] library(gregmisc)   Liaw, Andy
• [BioC] plotDensity in a multiple-figure enviroment   Liaw, Andy
• [BioC] bioconductor and ESS   Liaw, Andy
• [BioC] siggenes and log   Ashley Lin
• [BioC] p-value adjustment   Wenbin Liu
• [BioC] p-value adjustment   Wenbin Liu
• [BioC] Problem loadin repsTools   Zhi-Wei Lu
• [BioC] How to calculate Pearson coefficient between 2 genes in a group including 1500 genes?   Antoine Lucas
• [BioC] problem of downloading   Luo, Zhongjun
• [BioC] Limma statistics documentation..   James MacDonald
• [BioC] HG-U133A-tag   James MacDonald
• [BioC] Incompatible phenoData object. Created a new one.   James MacDonald
• [BioC] Generic Loess Normalization   James W. MacDonald
• [BioC] Large number of CEL files!!!   James W. MacDonald
• [BioC] LocusLink now redirects to Entrez Gene   James W. MacDonald
• [BioC] One chip analysis...   James W. MacDonald
• [BioC] Summary Statistics   James W. MacDonald
• [BioC] Summary Statistics   James W. MacDonald
• [BioC] siggenes and log   James W. MacDonald
• [BioC] limma Toptable   James W. MacDonald
• [BioC] RGList/MAList--extending subsetting behavior   James W. MacDonald
• [BioC] Question about using ReadAffy() to read CEL files   James W. MacDonald
• [BioC] load AnnBuilder and install XML   James W. MacDonald
• [BioC] load AnnBuilder and install XML   James W. MacDonald
• [BioC] Rggobi   James W. MacDonald
• [BioC] missing probesets when creating cdf package with makecdfenv   James W. MacDonald
• [BioC] Order in which ReadAffy() and read.affybatch()   James W. MacDonald
• [BioC] gcrma problem   James W. MacDonald
• [BioC] gcrma problem   James W. MacDonald
• [BioC] gcrma problem   James W. MacDonald
• [BioC] 217216_x_at is NOT dihydrolipoamide S-succinytransferase   James W. MacDonald
• [BioC] ellipse package   James W. MacDonald
• [BioC] gcrma problem   James W. MacDonald
• [BioC] Plotting Gene Expression Values   McGee, Monnie
• [BioC] problems using simpleaffy   Crispin Miller
• [BioC] problems using simpleaffy   Crispin Miller
• [BioC] simpleaffy   Crispin Miller
• [BioC] problems using simpleaffy   Crispin Miller
• [BioC] self-self hybridization and limma   Na, Ren
• [BioC] [marray] Importing SMD files into marray   Rene Nederhand
• Fwd: [BioC] [marray] Importing SMD files into marray   Rene Nederhand
• Fwd: [BioC] [marray] Importing SMD files into marray   Rene Nederhand
• [BioC] Summary Statistics   Michael Newton
• [BioC] finding and averaging replicate gene records   Oosting, J. (PATH)
• [BioC] problems using simpleaffy   Georg Otto
• [BioC] problems using simpleaffy   Georg Otto
• [BioC] problems using simpleaffy   Georg Otto
• [BioC] RE: How to fit patient as a fixed effect/paired samples   PJARES at clinic.ub.es
• [BioC] marrayQuality & marray : empty ?   Paquet, Agnes
• [BioC] missing probesets when creating cdf package with makecdfenv   Malick Paye
• [BioC] multtest dependencies   Francois Pepin
• [BioC] multtest dependencies   Francois Pepin
• [BioC] multtest dependencies   Francois Pepin
• [BioC] What do these headers mean?   S Peri
• [BioC] Conversion of a CEL file readable by Notepad   S Peri
• [BioC] Re: Conversion of a CEL file readable by Notepad   S Peri
• [BioC] design in mixed ref and dye-swap experiment   Silvano Piazza
• [BioC] design in mixed ref and dye-swap experiment   Silvano Piazza
• [BioC] (no subject)   Katherine Pollard
• [BioC] multtest Paired T-test   Katherine Pollard
• [BioC] multtest bug fixed   Katherine Pollard
• [BioC] Discriminance Analysis with Variance / DAV   Heike Pospisil
• [BioC] finding and averaging replicate gene records   Tomas Radivoyevitch
• [BioC] finding and averaging replicate gene records   Tomas Radivoyevitch
• [BioC] variable "ygs98cdfSYMBOL" was not found   Tomas Radivoyevitch
• [BioC] affy chicken?   Dipl.-Ing. Johannes Rainer
• [BioC] AnnBuilder questions...   Dipl.-Ing. Johannes Rainer
• [BioC] AnnBuilder questions...   Dipl.-Ing. Johannes Rainer
• [BioC] differing versions of limma   Adaikalavan Ramasamy
• [BioC] single color microarray analysis   Adaikalavan Ramasamy
• [BioC] RMA verse GCRMA   Adaikalavan Ramasamy
• [BioC] plotDensity in a multiple-figure enviroment   Adaikalavan Ramasamy
• [BioC] LIMMA vs. dChip   Adaikalavan Ramasamy
• [BioC] ReadAffy and hist() labels   Adaikalavan Ramasamy
• [BioC] ReadAffy and hist() labels   Adaikalavan Ramasamy
• [BioC] Large number of CEL files!!!   Adaikalavan Ramasamy
• [BioC] asking for some code   Adaikalavan Ramasamy
• [BioC] asking for some code   Adaikalavan Ramasamy
• [BioC] One chip analysis...   Adaikalavan Ramasamy
• [BioC] unable to re-install after interupted installation   Adaikalavan Ramasamy
• [BioC] rationale behind getBioC script   Adaikalavan Ramasamy
• [BioC] rationale behind getBioC script   Adaikalavan Ramasamy
• [BioC] cDNA data to expression values   Adaikalavan Ramasamy
• [BioC] unable to re-install after interupted installation   Adaikalavan Ramasamy
• [BioC] limma Toptable   Adaikalavan Ramasamy
• [BioC] finding and averaging replicate gene records   Adaikalavan Ramasamy
• [BioC] finding and averaging replicate gene records   Adaikalavan Ramasamy
• [BioC] Order in which ReadAffy() and read.affybatch()   Adaikalavan Ramasamy
• [BioC] boxplot   Adaikalavan Ramasamy
• [BioC] Order in which ReadAffy() and read.affybatch()   Adaikalavan Ramasamy
• [BioC] suggestion : new object for exprSet   Adaikalavan Ramasamy
• [BioC] qqplot   Adaikalavan Ramasamy
• [BioC] suggestion : new object for exprSet   Adaikalavan Ramasamy
• [BioC] plier crashes with 51 CEL files   Adaikalavan Ramasamy
• [BioC] plier crashes with 51 CEL files   Adaikalavan Ramasamy
• [BioC] MAPlot   Adaikalavan Ramasamy
• [BioC] getBioC and install.packages2 fail   Adaikalavan Ramasamy
• [BioC] MAPlot   Adaikalavan Ramasamy
• [BioC] getBioC and install.packages2 fail   Adaikalavan Ramasamy
• [BioC] followup on reading RNA digestion plots   Swati Ranade
• [BioC] followup on reading RNA digestion plots   Swati Ranade
• [BioC] bioconductor and ESS   A.J. Rossini
• [BioC] bioconductor and ESS   Barry Rowlingson
• [BioC] Fwd: help for cluster   Diego Diez Ruiz
• [BioC] Incompatible phenoData object. Created a new one.   SALIL SHARMA
• [BioC] plotting with log(x) values   Lana Schaffer
• [BioC] limma, subsets of design matrix and p-values   Mike Schaffer
• [BioC] XML under Debian   Anja Schiel
• [BioC] General statistical question 2 colour data   Anja Schiel
• [BioC] MA plot to pdf in limma   Anja Schiel
• [BioC] error using humanLLMappingsACCNUM2LL   Denise Scholtens
• [BioC] error using humanLLMappingsACCNUM2LL   Denise Scholtens
• [BioC] Aquantile normalization & transcriptional activity   Federico Scossa
• [BioC] Aquantile normalization & transcriptional activity   Federico Scossa
• [BioC] block design and how it handles missing values in Limma   Gordon Smyth
• [BioC] block design and how it handles missing values in Limma   Gordon Smyth
• [BioC] can't instal MetaData package "mouse4302"   Gordon Smyth
• [BioC] single color microarray analysis   Gordon Smyth
• [BioC] single color microarray analysis   Gordon Smyth
• [BioC] single color microarray analysis   Gordon Smyth
• [BioC] MetaData packages online   Gordon Smyth
• [BioC] can't instal MetaData package "mouse4302"   Gordon Smyth
• [BioC] Time course experiment in Limma   Gordon Smyth
• [BioC] can't instal MetaData package "mouse4302"   Gordon Smyth
• [BioC] Aquantile normalization & transcriptional activity   Gordon Smyth
• [BioC] Aquantile normalization & transcriptional activity   Gordon Smyth
• [BioC] vennDiagram error: Error in toptable   Gordon Smyth
• [BioC] extract genes from vennDiagram LIMMA ..How?,   Gordon Smyth
• [BioC] p-value adjustment   Gordon Smyth
• [BioC] loess and duplicate correlation   Gordon Smyth
• [BioC] differing versions of limma   Gordon K Smyth
• [BioC] paired experiments in limma   Gordon K Smyth
• [BioC] LIMMA: uneven replication of samples   Gordon K Smyth
• [BioC] Partial F-test using LIMMA   Gordon K Smyth
• [BioC] RE: How to fit patient as a fixed effect/paired samples   Gordon K Smyth
• [BioC] design in mixed ref and dye-swap experiment   Gordon K Smyth
• [BioC] MAPlot   Gordon K Smyth
• [BioC] Putting different colors on labels in plot (hclust)   JSPC (Jeppe Skytte Spicker)
• [BioC] AffyBatch: Replacing probe set IDs with Genebank Accesion numbers?   JSPC (Jeppe Skytte Spicker)
• [BioC] Error when running rma   Min-Han Tan
• [BioC] Bioconductor and R_LIBS   Steve Taylor
• [BioC] Can't normalize with alternative affy CDF environment   Ken Termiso
• [BioC] Convert (altcdfenvs)CdfEnvAffy object to useable cdf package or environment?   Ken Termiso
• [BioC] Multtest distributions   Ken Termiso
• [BioC] RT-PCR normalization & stats reference   Ken Termiso
• [BioC] Follow-up to: [R] Annotation metadata "kills" help.search   Gerard Tromp
• [BioC] JOB: Research Associate at Texas A&M   Marina Vannucci
• [BioC] Removing bad probesets   Hairong Wei
• [BioC] Removing bad probesets   Hairong Wei
• [BioC] Re: [Bioc-devel] Error in mget(ls(cdfenv), env = rgu34aGENENAME) : Object "rgu34aGENENAME" not found   James Wettenhall
• [BioC] Factorial experiment combined with blocking designs   Wu, Xiwei
• [BioC] is yeast2cdf available?   Wu, Xiwei
• [BioC] altcdfenvs error   Wu, Xiwei
• [BioC] RE: altcdfenvs error   Wu, Xiwei
• [BioC] SAM vs LIMMA vs EBAM   Wu, Xiwei
• [BioC] SAM vs LIMMA vs EBAM   Wu, Xiwei
• [BioC] SAM vs LIMMA vs EBAM   Wu, Xiwei
• [BioC] gcrma and custom CDF files : how to make them work together?   Zhijin Wu
• [BioC] gcrma() and get() -- oops, 2nd try [sorry for 1st bogus send]   Zhijin Wu
• [BioC] gcrma problem   Zhijin Wu
• [BioC] question about reading data into marray package   Jean Yee Hwa Yang
• [BioC] question about reading data into marray package   Yanqin Yang
• [BioC] Detecting overrepresented genomic loci   Yi, Andrew
• [BioC] homology packages and LocusLink IDs   Lynn Young
• [BioC] Problem with ABPkgBuilder function   John Zhang
• [BioC] load AnnBuilder and install XML   John Zhang
• [BioC] AnnBuilder questions...   John Zhang
• [BioC] variable "ygs98cdfSYMBOL" was not found   John Zhang
• [BioC] Error: couldn't find function "hgu133aACCNUM"   John Zhang
• [BioC] GOstats question   John Zhang
• [BioC] A beginner's question about assigning values to marray slots   Zhang, Yuanji
• [BioC] Problem about Affy   Jufen Zhou
• [BioC] Problem whith Rgraphviz   stefano iacus
• [BioC] LIMMA vs. dChip   jun.yan.a at utoronto.ca
• [BioC] single color microarray analysis   zhihua li
• [BioC] plotDensity in a multiple-figure enviroment   zhihua li
• [BioC] asking for some code   zhihua li
• [BioC] asking for some code   zhihua li
• [BioC] asking for some code   zhihua li
• [BioC] finding and averaging replicate gene records   zhihua li
• [BioC] finding and averaging replicate gene records   zhihua li
• [BioC] load AnnBuilder and install XML   zhihua li
• [BioC] load AnnBuilder and install XML   zhihua li
• [BioC] help in arrayMagic?   pmt1rew at leeds.ac.uk
• [BioC] Detecting overrepresented genomic loci   jeffrey rasmussen
• [BioC] hgu133plus2SYMBOL missing an entry for 211506_s_at   sdurinck at ebi.ac.uk
• [BioC] New Course***Microarrays Data Analysis with R/S+ and GGobi   sue at xlsolutions-corp.com
• [BioC] broken links to metadata   zhifu sun
• [BioC] globaltest procedure   zhifu sun
• [BioC] How to calculate Pearson coefficient between 2 genes in a group including 1500 genes?   xpzhang
• [BioC] block design and how it handles missing values in Limma   xiaocui zhu

Last message date: Thu Mar 31 23:46:11 CEST 2005
Archived on: Thu Mar 31 23:46:38 CEST 2005

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