[BioC] hgu133plus2SYMBOL missing an entry for 211506_s_at

Dick Beyer dbeyer at u.washington.edu
Wed Mar 2 19:06:20 CET 2005


I ran into an oddity that I thought others working with hgu133plus2 chips might want to know.

hgu133plus2SYMBOL is missing an entry for 211506_s_at.

>library(annaffy)
>library(hgu133plus2)
>library(hgu133plus2cdf)
>library(hgu133plus2probe)
>probeids <- ls(hgu133plus2SYMBOL)
> probeids[20834]
[1] "211506_s_at"
> getText(aafSymbol(probeids[20834], "hgu133plus2"))
[1] ""

But the netaffx website shows the Gene Symbol for 211506_s_at as IL8.

Here's my setup:
base 2.0.1 
datasets 2.0.1 
utils 2.0.1 
grDevices 2.0.1 
graphics 2.0.1 
stats 2.0.1 
methods 2.0.1 
tools 2.0.1 
Biobase 1.5.0 
reposTools 1.5.1 
affy 1.5.8 
GO 1.6.8 
KEGG 1.6.8 
annotate 1.5.1 
annaffy 1.0.11 
hgu133plus2 1.6.8 
nlme 3.1-53 
hgu133plus2cdf 1.4.3 
xtable 1.2-4 
matchprobes 1.0.12 
hgu133plus2probe 1.0

Cheers,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
 			Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html



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