[BioC] can't instal MetaData package "mouse4302"
Gordon Smyth
smyth at wehi.edu.au
Thu Mar 3 10:58:14 CET 2005
I'm trying to update my copy of the 'mouse4302' annotation package. I have
version 1.6.5, in the recent past version 1.6.8 was available, now I can't
seem to get the package at all. I think the package used to be listed on
the page http://www.bioconductor.org/data/metaData.html for the row
'moe430_2', but it's not there now.
If I try install.packages2("mouse4302") under R 2.0.1 for Windows, the file
'mouse4302_1.6.8.zip' which is downloaded turns out to be of size zero.
If I try install.packages2("mouse4302") under R 2.0.0 for linux (see the
session below), a directory 'Rlibs/mouse4302' is created which seems at
first sight to be a valid package, and even builds. However it will not
load. The DESCRIPTION file is dated 6 Jan 2005.
Can someone help me?
Gordon
> library(reposTools)
Loading required package: tools
Warning messages:
1: Incorrect permissions to edit package database,
/usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibList, curLib)
2: Incorrect permissions to edit package database,
/usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibList, curLib)
> install.packages2("mouse4302",lib="Rlibs")
Note: You did not specify a download type. Using a default value of: Source
This will be fine for almost all users
[1] "Attempting to download mouse4302 from
http://www.bioconductor.org/data/metaData/"
[1] "Download complete."
[1] "Installing mouse4302"
* Installing *source* package 'mouse4302' ...
** R
** data
** preparing package for lazy loading
Error in .find.package("mouse4302") : none of the packages were found
Execution halted
ERROR: lazy loading failed for package 'mouse4302'
From URL: http://www.bioconductor.org/data/metaData/
mouse4302 version 1.6.8
Warning message:
Installation of package mouse4302 had non-zero exit status in:
installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
> install.packages2("mouse4302",lib="Rlibs",develOK=TRUE)
Note: You did not specify a download type. Using a default value of: Source
This will be fine for almost all users
[1] "Attempting to download mouse4302 from
http://www.bioconductor.org/data/metaData/"
[1] "Download complete."
[1] "Installing mouse4302"
* Installing *source* package 'mouse4302' ...
** R
** data
** preparing package for lazy loading
Error in .find.package("mouse4302") : none of the packages were found
Execution halted
ERROR: lazy loading failed for package 'mouse4302'
** Removing '/export/share/disk501/lab0605/smyth/gordon/Rlibs/mouse4302'
** Restoring previous
'/export/share/disk501/lab0605/smyth/gordon/Rlibs/mouse4302'
From URL: http://www.bioconductor.org/data/metaData/
mouse4302 version 1.6.8
Warning message:
Installation of package mouse4302 had non-zero exit status in:
installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
> version
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 2
minor 0.0
year 2004
month 10
day 04
language R
> dir()
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