[BioC] What do these headers mean?
S Peri
biocperi at yahoo.com
Wed Mar 2 20:42:28 CET 2005
Software used: almost sure : GeneSpring
Normalized : is the gene expression of the probeset
after normalization.
Rest other values are min, max stdError and Std.Dev
from replicates.
P-value is P-value from T-test
Raw : This is where I have certain doubt. In my
opinion this could be the mean intensity values for
all the probes in that probeset.
-peri
> Column headers: My Interpretation
> Normalized : Expression value after
> normalization??
> Min Normalized : ????
> Max Normalized : ????
> StdErr Norm : ????
> StdDev Norm : ????
> t-test P-value : P-value
> Flags [A,M,P] : A - Absent; P - Present ; M - ???
> Raw : ????
> Min Raw : ????
> Max Raw : ????
> StdErr Raw : ????
> StdDev Raw : ????
>
>
> Thank you
>
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