[BioC] One chip analysis...

Adaikalavan Ramasamy ramasamy at cancer.org.uk
Thu Mar 10 21:59:43 CET 2005

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I do not think you can do much with one chip. Perhaps some image
analysis problems etc.

But even if you can do some "analysis" on a single chip, what will it
tell you ? You will not be able to separate biological from technical
variation. If you had some duplicated spots on the chip then perhaps
hope to estimate technical variation.

Please give us a more information on your study design and objectives.

Regards, Adai

On Thu, 2005-03-10 at 15:19 -0500, Khan, Sohail wrote:
> Hi All,
> I am new to Microarray Analysis and this list.  I posted this before, I don't know if it was posted correctly.
> I want to analyze just one chip..........Is limma suitable for this?  Could you suggest any other package.
> Thank you very much.
> Sohail Khan
> Scientific Programmer
> Genome Research Center
> 500 Sunnyside Boulevard
> Woodbury, NY 11797
> (516)422-4076
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