[BioC] One chip analysis...

[Adaikalavan Ramasamy]

Your mail got through. One way to check this yourself is to check the
BioConductor mailing archives at
https://stat.ethz.ch/pipermail/bioconductor/

I do not think you can do much with one chip. Perhaps some image
analysis problems etc.

But even if you can do some "analysis" on a single chip, what will it
tell you ? You will not be able to separate biological from technical
variation. If you had some duplicated spots on the chip then perhaps
hope to estimate technical variation.

Please give us a more information on your study design and objectives.

Regards, Adai




On Thu, 2005-03-10 at 15:19 -0500, Khan, Sohail wrote:
> Hi All,
> 
> I am new to Microarray Analysis and this list.  I posted this before, I don't know if it was posted correctly.
> I want to analyze just one chip..........Is limma suitable for this?  Could you suggest any other package.
> Thank you very much.
> 
> Sohail Khan
> Scientific Programmer
> COLD SPRING HARBOR LABORATORY
> Genome Research Center
> 500 Sunnyside Boulevard
> Woodbury, NY 11797
> (516)422-4076
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>