[BioC] No convergence in li wong fit
Ann Hess
hess at stat.colostate.edu
Wed Mar 16 16:16:31 CET 2005
When using the Li Wong algorithm in Bioconductor (specifically,
liwong<- expresso(data,normalize.method="invariantset",
bg.correct=FALSE,pmcorrect.method="pmonly",summary.method="liwong")
I got the error:
No convergence acheived in outlier loop in : fit.li.wong(probes,...)
I understand that this algorithm will fail to converge for some probe
sets, but is it possible to find out WHICH (or how many) probe sets failed
to converge?
Ann Hess
More information about the Bioconductor
mailing list