[BioC] can't instal MetaData package "mouse4302"

[Kasper Daniel Hansen]

Seth wrote yesterday that he is working on fixing the windows build of 
the metadata packages, so that part of the site has been taking ofline. 
He expected to be finished around noon pacific time. 

So I would try again tomorrow.

Kasper



On Thu, Mar 03, 2005 at 08:58:14PM +1100, Gordon Smyth wrote:
> I'm trying to update my copy of the 'mouse4302' annotation package. I have 
> version 1.6.5, in the recent past version 1.6.8 was available, now I can't 
> seem to get the package at all. I think the package used to be listed on 
> the page http://www.bioconductor.org/data/metaData.html for the row 
> 'moe430_2', but it's not there now.
> 
> If I try install.packages2("mouse4302") under R 2.0.1 for Windows, the file 
> 'mouse4302_1.6.8.zip' which is downloaded turns out to be of size zero.
> 
> If I try install.packages2("mouse4302") under R 2.0.0 for linux (see the 
> session below), a directory 'Rlibs/mouse4302' is created which seems at 
> first sight to be a valid package, and even builds. However it will not 
> load. The DESCRIPTION file is dated 6 Jan 2005.
> 
> Can someone help me?
> Gordon
> 
> > library(reposTools)
> Loading required package: tools
> Warning messages:
> 1: Incorrect permissions to edit package database, 
> /usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibList, curLib)
> 2: Incorrect permissions to edit package database, 
> /usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibList, curLib)
> > install.packages2("mouse4302",lib="Rlibs")
> Note: You did not specify a download type.  Using a default value of: Source
> This will be fine for almost all users
> 
> [1] "Attempting to download mouse4302 from 
> http://www.bioconductor.org/data/metaData/"
> [1] "Download complete."
> [1] "Installing mouse4302"
> * Installing *source* package 'mouse4302' ...
> ** R
> ** data
> ** preparing package for lazy loading
> Error in .find.package("mouse4302") : none of the packages were found
> Execution halted
> ERROR: lazy loading failed for package 'mouse4302'
> From URL:  http://www.bioconductor.org/data/metaData/
>         mouse4302 version 1.6.8
> 
> Warning message:
> Installation of package mouse4302 had non-zero exit status in: 
> installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
> > install.packages2("mouse4302",lib="Rlibs",develOK=TRUE)
> Note: You did not specify a download type.  Using a default value of: Source
> This will be fine for almost all users
> 
> [1] "Attempting to download mouse4302 from 
> http://www.bioconductor.org/data/metaData/"
> [1] "Download complete."
> [1] "Installing mouse4302"
> * Installing *source* package 'mouse4302' ...
> ** R
> ** data
> ** preparing package for lazy loading
> Error in .find.package("mouse4302") : none of the packages were found
> Execution halted
> ERROR: lazy loading failed for package 'mouse4302'
> ** Removing '/export/share/disk501/lab0605/smyth/gordon/Rlibs/mouse4302'
> ** Restoring previous 
> '/export/share/disk501/lab0605/smyth/gordon/Rlibs/mouse4302'
> From URL:  http://www.bioconductor.org/data/metaData/
>         mouse4302 version 1.6.8
> 
> Warning message:
> Installation of package mouse4302 had non-zero exit status in: 
> installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
> > version
>          _
> platform i686-pc-linux-gnu
> arch     i686
> os       linux-gnu
> system   i686, linux-gnu
> status
> major    2
> minor    0.0
> year     2004
> month    10
> day      04
> language R
> > dir()
> 
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-- 
Kasper Daniel Hansen, Research Assistant
Department of Biostatistics, University of Copenhagen