[BioC] vennDiagram error: Error in toptable
Dennis Hazelett
hazelett at uoneuro.uoregon.edu
Wed Mar 23 07:57:27 CET 2005
Hello bioconductors,
while trying to make a vennDiagram I got the following error:
> results <- decideTests(eb,
method="separate",adjust.method="fdr",p.value=0.05)
> results
TestResults matrix
PPK PRO PCD
[1,] 0 0 -1
[2,] -1 1 0
[3,] 0 1 0
[4,] -1 0 -1
[5,] -1 0 0
6139 more rows ...
> vennDiagram(results,method="separate",include="both")
Error in toptable(fit = fit[c("coefficients", "stdev.unscaled")], coef =
coef, :
(list) object cannot be coerced to integer
Has anyone seen this before or know how to fix it? I think I passed the
right arguments (?) based on the help files. I'm using R 2.0.1 and
Bioconductor release 1.5.
Thanks
-Dennis
More information about the Bioconductor
mailing list