[BioC] vennDiagram error: Error in toptable

Dennis Hazelett hazelett at uoneuro.uoregon.edu
Wed Mar 23 07:57:27 CET 2005


Hello bioconductors,
while trying to make a vennDiagram I got the following error:

 > results <- decideTests(eb, 
method="separate",adjust.method="fdr",p.value=0.05)
 > results
TestResults matrix
     PPK PRO PCD
[1,]   0   0  -1
[2,]  -1   1   0
[3,]   0   1   0
[4,]  -1   0  -1
[5,]  -1   0   0
6139 more rows ...
 > vennDiagram(results,method="separate",include="both")
Error in toptable(fit = fit[c("coefficients", "stdev.unscaled")], coef = 
coef,  :
        (list) object cannot be coerced to integer

Has anyone seen this before or know how to fix it? I think I passed the 
right arguments (?) based on the help files. I'm using R 2.0.1 and 
Bioconductor release 1.5.
Thanks
-Dennis



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