First quarter 2012 Archives by thread
Starting: Mon Jan 2 09:41:39 CET 2012
Ending: Sat Mar 31 20:24:17 CEST 2012
Messages: 625
- [R-sig-ME] covariance structures for longitudinal models
Antonio P. Ramos
- [R-sig-ME] cannot increase the number of iterations in lme call over 146
Antonio P. Ramos
- [R-sig-ME] extracting values from lmer
Kevin Spring
- [R-sig-ME] Problems in using GEEs
esnm2 at mnhn.fr
- [R-sig-ME] question regarding summary output with three-way interactions
Stefanie Kuchinsky
- [R-sig-ME] bootstrap variance component in a mixed linear model
Kevin Spring
- [R-sig-ME] Tukey after lme does not match
Alen Hajnal
- [R-sig-ME] (SMALL CORRECTION): Tukey after lme does not match
Alen Hajnal
- [R-sig-ME] Correlated count data technique advice
Lee Davis
- [R-sig-ME] Mean of random effects same as fixed effect?
Jens Åström
- [R-sig-ME] package ‘lme4a’ is not available (for R version 2.14.1)
George Leckie
- [R-sig-ME] Correlated Count Data
Lee Davis
- [R-sig-ME] nlme model not working but lme models are fine [SEC=UNCLASSIFIED]
Gosse, Michelle
- [R-sig-ME] lmer model for repeated measure in RCB design
Schreiber, Stefan
- [R-sig-ME] Mixed model with zero truncated Poisson distributed data
Helen Ward
- [R-sig-ME] Mixed model formulation
Matthew Malter Cohen
- [R-sig-ME] how to get predicted values from a lme call with random intercepts and AR(1) for the residuals ?
Antonio P. Ramos
- [R-sig-ME] start values for starting parameters, factors [SEC=UNCLASSIFIED]
Gosse, Michelle
- [R-sig-ME] glmmADMB: Error in UseMethod("droplevels")
Isa Blasco
- [R-sig-ME] SE for predictions in lme
marta rufino
- [R-sig-ME] Interpreting linear models
mails
- [R-sig-ME] glmmADMB v 0.7.1
Christopher Rota
- [R-sig-ME] In II[, ii] + REmat$codes[[i]] :
Giulia Dotti Sani
- [R-sig-ME] Fwd: lme4 and sample size
Douglas Bates
- [R-sig-ME] lme4 and sample size
Douglas Bates
- [R-sig-ME] specifying/interpreting random effects with near-zero variance in glmer()
Margaret Metz
- [R-sig-ME] Comparing results from glmer and glht
Colin Wahl
- [R-sig-ME] Advice on GLS model specification
Erik Frenzel
- [R-sig-ME] MC, sample weights, and mixed effect models [SEC=UNCLASSIFIED]
Gosse, Michelle
- [R-sig-ME] MCMCglmm output 1) on right scale? 2) produces huge deviance spread?
Ryan King
- [R-sig-ME] Log-likelihood and mixed models in glmer
Andrew Miles
- [R-sig-ME] Interpreting HPD intervals to determine confidence of variance components
Angela Eads
- [R-sig-ME] zero-truncated mixed effects logistic regression?
Martin Schmettow
- [R-sig-ME] Fwd: questions about mixed logit models with R
Douglas Bates
- [R-sig-ME] convergence problems and model averaging
Diego Bilski
- [R-sig-ME] BLUPs from MCMCglmm
Eryn McFarlane
- [R-sig-ME] family for random coefficients in glmmADMB?
Joshua Wiley
- [R-sig-ME] GLMM parameter interpretation
Adam Smith
- [R-sig-ME] lme or lmer?
Giorgio Arcara
- [R-sig-ME] Off the topic: Problem with ISOdatetime
Julia Sommerfeld
- [R-sig-ME] Sresid with lme4
Rense Nieuwenhuis
- [R-sig-ME] Confusion specifiying random effect interactions
Stuart Luppescu
- [R-sig-ME] MCMCglmm output 1) on right scale? 2) produces huge deviance spread? (Jarrod Hadfield)
Ryan King
- [R-sig-ME] Using Observations as Random Effect in GLMM?
Daniel Hocking
- [R-sig-ME] Using lmer in survival
Flores-de-Gracia, Eric
- [R-sig-ME] Bootstrapping linear mixed model
Jianyun Wu
- [R-sig-ME] accounting for residual autocorrelation
Tal Avgar
- [R-sig-ME] adding a kinship matrix to a GLMM
mhorton at uchicago.edu
- [R-sig-ME] Trouble Replicating Unstructured Mixed Procedure in R
Charles Determan Jr
- [R-sig-ME] Visualizing coefficients
Jarrett Byrnes
- [R-sig-ME] [R-SIG-Mac] Visualizing coefficients
Ben Bolker
- [R-sig-ME] GLMM distribution family model comparison using Poisson w/observation level random effect
Shawn McCracken
- [R-sig-ME] checking overdispersion when modelling proportions
Kristen Mancuso
- [R-sig-ME] Problems with parametric bootstrap, glmer
Gustaf Granath
- [R-sig-ME] r-sig-mixed-models answer
Ben Bolker
- [R-sig-ME] lmer on dataset with missing values 'not at random'
Charles Determan Jr
- [R-sig-ME] repeated measure in partially crossed design
matteo dossena
- [R-sig-ME] setting corStruct range in a mixed effects model
Shawn O'Neil
- [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 9
Natalia Vizcaíno Palomar
- [R-sig-ME] Book about linear mixed effects models using R
Andrzej Galecki
- [R-sig-ME] Very different results from lmer and MCMCglmm
Stuart Luppescu
- [R-sig-ME] question about random intercept reflecting mean value of between subject factor
Odir Rodríguez Villagra
- [R-sig-ME] Estimating variance in linear mixed models
Maggie Neff
- [R-sig-ME] non-parametric mixed model
Lene Jung
- [R-sig-ME] MCMCglmm rcov specifications
Ryan King
- [R-sig-ME] lme capable of running with missing data?
Charles Determan Jr
- [R-sig-ME] Heckit for HLM models
Nita Umashankar
- [R-sig-ME] GLMM with lme4/ marginal predictions
Joerg Luedicke
- [R-sig-ME] cross-validation of linear mixed effect models
Rachel Cohen
- [R-sig-ME] lmer blocking by subject?
Tiffanie Cross
- [R-sig-ME] Modeling ecological observations
Federico Tettamanti
- [R-sig-ME] glmmADMB error
Raquel Benavides
- [R-sig-ME] fixed-effects models or mixed-effects models for population data
Jianyun Wu
- [R-sig-ME] Bootstrap the variance difference
Kevin Spring
- [R-sig-ME] Extracting means and SEs from an lmer object
Chris Eckert
- [R-sig-ME] Check the predictions of glmer
Fan Mongxie
- [R-sig-ME] nlme -95% CI of parameter estimates
SHAILLY MEHROTRA
- [R-sig-ME] Upcoming changes in lme4
Douglas Bates
- [R-sig-ME] MCMCglmm with zibinomial
mjgeha at huskers.unl.edu
- [R-sig-ME] Error when using models with lmer
Olga Vitek
- [R-sig-ME] A question
sheida sarafzade
- [R-sig-ME] LMM with Big data using binary DV
AC Del Re
- [R-sig-ME] ghlt different results for different hypotheses?
m.fenati at libero.it
- [R-sig-ME] hurdle model with glmmadmb
Raquel Benavides
- [R-sig-ME] random intercept and random slope
André Barbosa
- [R-sig-ME] about warning "In mer_finalize(ans) : singular convergence (7)"
Toni Hernandez-Matias
- [R-sig-ME] mixed model-request for help
Tulsi Paudel
- [R-sig-ME] Doubts about model.avg function at MuMin package
Fernando Schmidt
- [R-sig-ME] GWS in MCMCglmm and INLA
Eder David Borges da Silva
- [R-sig-ME] lmer correlation btw random effects
Fan Mongxie
- [R-sig-ME] generalized linear mixed model for qualitative in R
Fan, Ruzong (NIH/NICHD) [E]
- [R-sig-ME] Comparing against a negative control in an LMM
Masca, Nick
- [R-sig-ME] MCMCglmm with cross-classified random effects
Agostino Moro
- [R-sig-ME] Any package for best subset selection for random effects model
Tao Zhang
- [R-sig-ME] Interpretation of nonlinear mixed-effects modeling results
Gang Chen
- [R-sig-ME] R-sig-mixed-models Digest, Vol 62, Issue 29
anthony.sealey at utoronto.ca
- [R-sig-ME] Any package for best subset selection for, random effects model
Antoine Tremblay
- [R-sig-ME] Simple Task: CI on Total Imprecision
Jeffrey.Morris at sanofipasteur.com
- [R-sig-ME] Reg. interpretation of parameter CIs from lmer()
Geetha Ramaswami
- [R-sig-ME] Modeling of behavioural observation
Federico Tettamanti
- [R-sig-ME] glmer error
Felipe Nunes
- [R-sig-ME] modelling seasonal patterns as random effects in a monthly time series
Jianyun Wu
- [R-sig-ME] random effects structure and overfitting
John.Morrongiello at csiro.au
- [R-sig-ME] LMER vs MLwiN
W Robert Long
- [R-sig-ME] lmer and aovlmer.fnc
Jaime Undurraga
- [R-sig-ME] crossed random effect
Robert Kozarski
- [R-sig-ME] Need some help with glmer output
lopez toledo
- [R-sig-ME] Moving from lme4a to lme4Eigen correlation of random effects goes to 1
Jennifer Lyon
- [R-sig-ME] GLMER - p values proportion data
Rebecca Ross
- [R-sig-ME] Use of mixed models when the causal relations are unclear?
Hans Ekbrand
- [R-sig-ME] Need some help with glmer output (Hans Ekbrand)
lopez toledo
- [R-sig-ME] overlapping multiple membership specification in lme4
Heidi Colleran
- [R-sig-ME] Incorporating a Temporal Correlation Structure in a GLM
Kevin J. Ryan
- [R-sig-ME] Incorporating a Temporal Correlation Structure, in a GLM
Highland Statistics Ltd
- [R-sig-ME] Assumptions on within group errors in lme model
amelie pinet
- [R-sig-ME] Problematic correlations between random effects
Leite,Walter
- [R-sig-ME] lme4a and Profile
Rachel Cohen
- [R-sig-ME] nlme Fixed Variance Function
Agostino Moro
- [R-sig-ME] Calculating Pseudo R-squared from nlme
Isaac Petersen
- [R-sig-ME] fitting a distribution to zero-inflated catch per unit effort mixed model
Karla Letto
- [R-sig-ME] errors in mcmcpvalue
Hightower, Joe C
- [R-sig-ME] Bleeding edge lme4 (or lme4a) plus DF estimation
Joehanes, Roby (NIH/NHLBI) [F]
- [R-sig-ME] influence.ME questions
Hightower, Joe C
- [R-sig-ME] permutation approach to know effect of one factor (factor A) to another (factor B) in each level of factor A (although it is slow)
Kazunari Nozue
- [R-sig-ME] Need help to find multifactors influence
Muhammad Arshad
- [R-sig-ME] How to calculate predictions
Stuart Luppescu
- [R-sig-ME] General question about GLMM and heterogeneity of variance
RH Gibson
- [R-sig-ME] error message using glmmadmb
RH Gibson
- [R-sig-ME] decimal data with nested random effects
Claire Brittain
- [R-sig-ME] partner
rajibul islam
- [R-sig-ME] Comparison of random coefficients between groups
Chang Seok Han
- [R-sig-ME] Contribution to lme4Eigen
Joehanes, Roby (NIH/NHLBI) [F]
- [R-sig-ME] glmmADMB package
Robert Laforge
- [R-sig-ME] error in nlme()
amelie pinet
- [R-sig-ME] Quadratic with Random Offset in One Dimension
Christopher D. Long
- [R-sig-ME] Family specification - MCMCglmm survival analysis
Steven Brady
- [R-sig-ME] Fit SGLMM by lme4 package
Douglas Bates
- [R-sig-ME] Covariance models with lme and gls
Student Stats
- [R-sig-ME] Question on the glmer function of the lme4 R package
Feddag Mohand-Larbi
- [R-sig-ME] zero-inflation with mixed-effects, glmmADMB, and cloglog
Anne Bjorkman
- [R-sig-ME] [R-sig-phylo] possible issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme)
Simon Blomberg
- [R-sig-ME] MCMCglmm: multivariate response with phylogenetic structure
Kyle Edwards
- [R-sig-ME] model comparison in glmmADMB
RH Gibson, School Biological Sciences
- [R-sig-ME] Comparing the effect size of parameters across non-nested models with different outcomes
Isaac Petersen
- [R-sig-ME] lmer/glmer standard error interpretation and visualization
Colin Wahl
- [R-sig-ME] Mixed Effects Logistic Regression Model and finding p-values
Charla Patterson
- [R-sig-ME] Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors
chantepie at mnhn.fr
- [R-sig-ME] lme4Eigen's bootMer & installing latest svn
Mike Lawrence
- [R-sig-ME] glmmADMB mcmc output
Dean Castillo
- [R-sig-ME] Fwd: Re: Question on the glmer function of the lme4 R package
Feddag Mohand-Larbi
- [R-sig-ME] glmm with continuous data
Danson, Bryan
- [R-sig-ME] glmADMB mcmc output
Dean Castillo
- [R-sig-ME] (no subject)
Brian Edward
- [R-sig-ME] (no subject)
Douglas Bates
- [R-sig-ME] (no subject)
Danson, Bryan
- [R-sig-ME] Incorrect reporting of variance component from weighted LMM with lme4?
Chris Gast
- [R-sig-ME] observation level random effects/kinship model
Juliet Hannah
- [R-sig-ME] No need to handle between-group correlation structure in glmm in general?
Junyan Luo
- [R-sig-ME] How to write crossed and nested random effects in a model
withanage Niroshan perera
- [R-sig-ME] Fwd: Re: [R] how to write crossed and nested random effects in a model
Ben Bolker
- [R-sig-ME] Specifying continuous covariates and predictors in lmer
Nicole Prause
- [R-sig-ME] issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme)
Rudolf Philippe Rohr
- [R-sig-ME] lme code
Bhogal, Harkiran
- [R-sig-ME] a good book?
Saang-Yoon Hyun
- [R-sig-ME] help with lme4
Douglas Bates
- [R-sig-ME] Package name changes on the SVN repository at lme4.R-forge.R-project.org
Douglas Bates
- [R-sig-ME] With glmmPQL Error in corFactor.corSpatial(object)
Gregor Didenko
- [R-sig-ME] multicore lmer: any changes since 2007?
Mike Lawrence
- [R-sig-ME] Measures of dispersion for random effects
Andrew Correia
- [R-sig-ME] Unacceptibly high autocorrelation in MCMCglmm
Stuart Luppescu
- [R-sig-ME] Poisson GLMM: where is the deviance?
Luciano La Sala
- [R-sig-ME] extracting gradient and hessian matrix from lme4
Joshua Wiley
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Malcolm Fairbrother
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Ben Bolker
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Rolf Turner
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Joerg Luedicke
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Ben Bolker
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Fredrik Nilsson
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Joerg Luedicke
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Ben Bolker
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Adam Smith
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Adam Smith
- [R-sig-ME] modelling proportions, with aggregated data, and the new/old lme4
Fredrik Nilsson
- [R-sig-ME] Conflicting p-values from pvals.fnc
Tom Gijssels
- [R-sig-ME] glmm with a tweedie distribution
Danson, Bryan
- [R-sig-ME] Wald tests GLMM with glmer
Thomas Merkling
- [R-sig-ME] repeated measures: lme(r) vs manova
Nathan Lemoine
- [R-sig-ME] Anova/deviance table in glmmADMB
Thomas Merkling
- [R-sig-ME] Question regarding lme repeated measures error in case 1, but not case 2
Petter Hedberg
- [R-sig-ME] Question regarding lme mixed model, error in case 1, not in case 2
Petter Hedberg
- [R-sig-ME] coefplot2 package not available
Juan José Santos Blanco
- [R-sig-ME] GLMM - how to consider temporal pseudo-replication in the analyses?
Lívia Dorneles Audino
- [R-sig-ME] problem in the implementation of the function "lmer" of the "lme4" package - Important
cristiana vieira
- [R-sig-ME] Back-transforming binomial standard errors
Adam Hayward
- [R-sig-ME] covariances between non normal traits
Celine Teplitsky
- [R-sig-ME] Help ordinal mixed model!
Ivan Bezerra Allaman
- [R-sig-ME] question on MCMCglmm
emre karaman
- [R-sig-ME] help with ordinal mixed model (reposted from r-help)
Ben Bolker
- [R-sig-ME] [ADMB Users] Anova table for glmm.admb objects
Ben Bolker
- [R-sig-ME] Help understanding residual variance
Ista Zahn
- [R-sig-ME] Dispersion parameter negbin1 in glmmADMB
Hanna ten Brink
- [R-sig-ME] What error distribution should I use?
Lívia Dorneles Audino
- [R-sig-ME] Zero inflated GAMM
Bert Harris
- [R-sig-ME] coefplot2/glmmADMB
Ben Bolker
- [R-sig-ME] discrepancy between paired t test and glht on lme models
Rajasimhan Rajagovindan
- [R-sig-ME] structure of a lmer code
Antoine TARDIF
- [R-sig-ME] SUR in lmer
Giulia Dotti Sani
- [R-sig-ME] error on example
Brent Pedersen
- [R-sig-ME] problems to install glmmADMB
Natalia Vizcaíno Palomar
- [R-sig-ME] Is anyone using the lmList() function in the lme4 package?
Vasco Cadavez
- [R-sig-ME] lme4a installation
Boris Shor
- [R-sig-ME] MCMC model selection reference
Ray Danner
Last message date:
Sat Mar 31 20:24:17 CEST 2012
Archived on: Tue Apr 10 09:16:34 CEST 2012
This archive was generated by
Pipermail 0.09 (Mailman edition).