March 2004 Archives by thread

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Starting: Mon Mar 1 00:55:42 CEST 2004
Ending: Wed Mar 31 23:59:11 CEST 2004
Messages: 393

• [BioC] installing affy devel package   Ben Bolstad
• [BioC] installing affy devel package   Ben Bolstad
• [BioC] Re: LimmaGUI   James Wettenhall
• [BioC] Statistical comparison of low replicate affy data   Naomi Altman
• [BioC] limma design matrix   Gordon Smyth
• [BioC] An ESR essay about software design, and how it applies to Bioconductor   Ann Loraine
• [BioC] Quantile Normalization on mice data   Arne.Muller at aventis.com
• [BioC] import data for limma analysis   Tineke Casneuf
  • [BioC] import data for limma analysis   Gordon Smyth
    • [BioC] import data for limma analysis   Tineke Casneuf
      • [BioC] import data for limma analysis   Gordon Smyth
• [BioC] AffyPLM   Arne.Muller at aventis.com
• [BioC] cDNA microarray Questions   michael watson (IAH-C)
  • [BioC] cDNA microarray Questions   Naomi Altman
• [BioC] An ESR essay about software design, and how it applies to Bioconductor   Wolfgang Huber
• [BioC] How to modify an Affybatch object?   Puhong Gao
  • [BioC] How to modify an Affybatch object?   Rafael A. Irizarry
    • [BioC] How to modify an Affybatch object?   Puhong Gao
  • [BioC] How to modify an Affybatch object?   Johannes Freudenberg
• [BioC] An ESR essay about software design, and how it applies to Bioconductor   Johannes Freudenberg
• [BioC] Limma and missing data   Sean Davis
  • [BioC] Limma and missing data   Matthew Ritchie
• [BioC] p-values   Renate van Dorp
• [BioC] cDNA microarray Questions   rwin qian
• [BioC] RMA and quantile normalisation   Arne.Muller at aventis.com
• [BioC] RMA and quantile normalisation   Arne.Muller at aventis.com
  • [BioC] RMA and quantile normalisation   Johannes Freudenberg
  • [BioC] RMA and quantile normalisation   Francois Collin
  • [BioC] RMA and quantile normalisation   Rafael A. Irizarry
• [BioC] RE: AffyPLM   Mark Reimers
• [BioC] missing MAP locations for hgu133plus2 annotation   Srikanth
• [BioC] problem with mva.pairs   Francesca Buffa
  • [BioC] problem with mva.pairs   Rafael A. Irizarry
  • [BioC] problem with mva.pairs   Johannes Freudenberg
    • [BioC] problem with mva.pairs   Ben Bolstad
• [BioC] normalization data with ..txt or ..xls file by marray or limma   rwin qian
  • [BioC] normalization data with ..txt or ..xls file by marray or limma   Matthew Ritchie
    • [BioC] normalization data with ..txt or ..xls file by marray or limma   rwin qian
      • [BioC] normalization data with ..txt or ..xls file by marray or limma   Matthew Ritchie
• [BioC] nature review article   Isaac Mehl
  • [BioC] nature review article   Rafael A. Irizarry
• [BioC] select top genes based on p-value in limma   p hu
  • [BioC] select top genes based on p-value in limma   Gordon Smyth
• [BioC] Selection of quantitative differences b/w two M vs A plots after rma   Anthony Bosco
• [BioC] RMA false positive rate   Matthew Hannah
• [BioC] New packages in BioC   Jeff Gentry
• [BioC] select top genes based on p-value in limma   Arne.Muller at aventis.com
  • [BioC] select top genes based on p-value in limma   Jean Yee Hwa Yang
• [BioC] Artifact in RMA-normalized data   Mary Putt
  • [BioC] Artifact in RMA-normalized data   Rafael A. Irizarry
• [BioC] limma Composite Normalisation & Plotting   Jason Skelton
  • [BioC] limma Composite Normalisation & Plotting   Gordon Smyth
• [BioC] when do linear models work?   Arne.Muller at aventis.com
  • [BioC] when do linear models work?   Naomi Altman
• [BioC] Limma: design and contrast matrices   Per Gregersen
  • [BioC] Genotype x Time factorial experiments - a request for data   Gordon Smyth
• [BioC] select top genes based on p-value in limma   James MacDonald
• [BioC] when do linear models work?   James MacDonald
• [BioC] Limma Package to read cDNA data   Joyce Gu
  • [BioC] Limma Package to read cDNA data   Gordon Smyth
• [BioC] memory   Joshi, Nina (NIH/NCI)
• [BioC] when do linear models work?   Arne.Muller at aventis.com
• [BioC] reading in a text file   Jamila Ahdidan
• [BioC] Limma Package to read cDNA data   Joyce Gu
• [BioC] gls.series error ?   Valerie Cognat
  • [BioC] gls.series error ?   Gordon K Smyth
• [BioC] reading in a text file   Tom R. Fahland
• [BioC] RMA and quantile normalisation   Mark Reimers
• [BioC] Limma Package to read cDNA data   James MacDonald
• [BioC] problem for dealing with replicated spots in slide   Yi Zou
  • [BioC] problem for dealing with replicated spots in slide   Gordon K Smyth
• [BioC] Loess Normalization of Spotted Chip   Tzulip Phang
  • [BioC] Loess Normalization of Spotted Chip   Gordon K Smyth
    • [BioC] Loess Normalization of Spotted Chip   Tzulip Phang
      • [BioC] Loess Normalization of Spotted Chip   Wolfgang Huber
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Genelogic dilution series mixed samples   Matthew Hannah
  • [BioC] Genelogic dilution series mixed samples   Rafael A. Irizarry
• [BioC] normalize chips from different expressets   Rani Elkon
• [BioC] reading txt files, plots and linear models   Jamila Ahdidan
  • [BioC] reading txt files, plots and linear models   Robert Gentleman
• [BioC] public CEL files   Phguardiol at aol.com
  • [BioC] public CEL files   Rafael A. Irizarry
• [BioC] Multtest   Roger Vallejo
• [BioC] reading txt files, plots and linear models   Matthew Hannah
• [BioC] public CEL files   James MacDonald
• [BioC] normalize chips from different expressets   Matthew Hannah
• [BioC] Multtest   James MacDonald
  • [BioC] Liwong method   Hua Li
    • [BioC] Liwong's method in Affy package   Hua Li
      • [BioC] Liwong's method in Affy package   Rafael A. Irizarry
• [BioC] Replicates array   Paola Sgado'
  • [BioC] Replicates array   Johannes Freudenberg
    • [BioC] Replicates array   Paola Sgado'
      • [BioC] Combining objects of marrayRaw   Tzulip Phang
      • [BioC] Combining objects of marrayRaw   Jean Yee Hwa Yang
      • [BioC] Combining objects of marrayRaw   Tzulip Phang
• [BioC] Limma Package to read cDNA data   Joyce Gu
  • [BioC] Limma Package to read cDNA data   Matthew Ritchie
• [BioC] Error in reading gal file with limma package   Joyce Gu
  • [BioC] quality control on arrays   Anna Cao
  • [BioC] Error in reading gal file with limma package   Matthew Ritchie
• [BioC] quality control on arrays   Anna Cao
• [BioC] Error message in imageplot of limma packages   Joyce Gu
  • [BioC] Error message in imageplot of limma packages   Matthew Ritchie
• [BioC] Error in reading gal file with limma package   Joyce Gu
• [BioC] Information about the next release (1.4)   A.J. Rossini
• [BioC] limma question   Julia Engelmann
• [BioC] legend to hist()   Tineke Casneuf
  • [BioC] legend to hist()   Rafael A. Irizarry
• [BioC] suggestions of books   Marcelo Luiz de Laia
  • [BioC] CV versus Intensity plots   Lawrence-Paul Petalidis
• [BioC] suggestions of books   michael watson (IAH-C)
• [BioC] legend to hist()   Matthew Hannah
• [BioC] NormalizeBetweenArrays   Jason Skelton
  • [BioC] NormalizeBetweenArrays   Gordon Smyth
    • [BioC] NormalizeBetweenArrays   Jason Skelton
      • [BioC] NormalizeBetweenArrays   Gordon Smyth
• [BioC] suggestions of books   Kaushik, Narendra K
• [BioC] Problems with Hu6800 and GCRMA   Stiles, David (NIH/NIDDK)
• [BioC] work shops/summer schools   Miroslava Cuperlovic-Culf
  • [BioC][BIOCTRAIN] work shops/summer schools   Vincent Carey 525-2265
    • [BioC] work shops/summer schools (more)   E Motakis, Mathematics
      • [BioC] work shops/summer schools (more)   Robert Gentleman
• [BioC] Problems with Hu6800 and GCRMA...   Stiles, David (NIH/NIDDK)
  • [BioC] Problems with Hu6800 and GCRMA...   Jeff Gentry
  • [BioC] Problems with Hu6800 and GCRMA...   Robert Gentleman
• [BioC] where to get R 1.9.0   Lizhe Xu
  • [BioC] where to get R 1.9.0   Robert Gentleman
• [BioC] limma question   Gordon Smyth
• [BioC] Problems with Hu6800 and GCRMA...   Liu, Yongxing
• [BioC] New packages in Bioconductor   Jeff Gentry
• [BioC] Warning message: package hgu133acdf was built under R version 1.9.0   Lizhe Xu
• [BioC] getting started   Dennis Hazelett
  • [BioC] getting started   Jean Yee Hwa Yang
  • [BioC] getting started   Robert Gentleman
  • [BioC] getting started   Gordon Smyth
• [BioC] Looking for an opinion about Affymetrix signals   sanges at biogem.it
• [BioC] error using gcrma   Harry Hurd
• [BioC] getting started   michael watson (IAH-C)
• [BioC] microarray-norm   michael watson (IAH-C)
• [BioC] (no subject)   Maria Fookes
• [BioC] Problems with Hu6800 and GCRMA...   Stiles, David (NIH/NIDDK)
• [BioC] Looking for an opinion about Affymetrix signals   James MacDonald
  • [BioC] Looking for an opinion about Affymetrix signals   Remo Sanges
• [BioC] Re: New versions of annotation data pacakges   John Zhang
• [BioC] more multtest problems   michael watson (IAH-C)
• [BioC] Re: suggestions of books   YUK FAI LEUNG
  • [BioC] LC-MS proteomics data   Stephen Nyangoma
• [BioC] limma genedata   Dennis Hazelett
  • [BioC] limma genedata   Gordon Smyth
  • [BioC] limma genedata   Matthew Ritchie
• [BioC] Quantile normalization vs. data distributions   Stan Smiley
  • [BioC] Quantile normalization vs. data distributions   Naomi Altman
    • [BioC] Quantile normalization vs. data distributions   Ben Bolstad
• [BioC] printtiploess error   Susan Renn
  • [BioC] printtiploess error   Gordon K Smyth
  • [BioC] Minimum no. of chips for express/rma/gcrma etc   Aedin
• [BioC] Question for spotStatus() function   Yi Zou
  • [BioC] Question for spotStatus() function   Gordon K Smyth
• [BioC] Question: Background correction using sequence info!   Puhong Gao
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] LC-MS data   Nicholas Lewin-Koh
• [BioC] questions about Affy package from new user   Lizhe Xu
• [BioC] questions about Affy package from new user: one more question   Lizhe Xu
• [BioC] utils required for EBarrays   Arne.Muller at aventis.com
  • [BioC] utils required for EBarrays   Vincent Carey 525-2265
  • [BioC] utils required for EBarrays   A.J. Rossini
• [BioC] RE: Bioconductor Digest, Vol 13, Issue 27   Victor M Trevino-Alvarado
• FW: [BioC] Two-different spacing, limma   Maria Fookes
  • FW: [BioC] Two-different spacing, limma   Matthew Ritchie
• [BioC] RNA/gDNA normalizations   Maria Fookes
• [BioC] MOE430 A and B   peter robinson
  • [BioC] MOE430 A and B   Robert Gentleman
  • [BioC] MOE430 A and B   Ben Bolstad
    • [BioC] MOE430 A and B   Aedin
      • [BioC] MOE430 A and B - bug?   Jose Duarte
      • [BioC] MOE430 A and B - bug?   Jeff Gentry
      • [BioC] MOE430 A and B - bug?   Aedin
      • [BioC] MOE430 A and B - bug?   Jose Duarte
• [BioC] SAM : warning messages problem   Willy Wynant
  • [BioC] SAM : warning messages problem   Holger Schwender
  • [BioC] SAM : warning messages problem   Robert Gentleman
• [BioC] Suggestion to geneplotter vignette   Palle Villesen
• [BioC] dupcor.series   Jason Skelton
  • [BioC] dupcor.series   Gordon Smyth
    • [BioC] dupcor.series   Jason Skelton
      • [BioC] dupcor.series   Gordon Smyth
• [BioC] questions about Affy package from new user   James MacDonald
• [BioC] questions about Affy package from new user: one more question   James MacDonald
  • [BioC] questions about Affy package from new user: onemore question   Adaikalavan Ramasamy
• [BioC] Subsetting Affybatch objects by gene lists.   Horswell, Stuart
  • [BioC] Subsetting Affybatch objects by gene lists.   Aedin
  • [BioC] Subsetting Affybatch objects by gene lists.   Adaikalavan Ramasamy
• [BioC] Minimum no. of chips for express/rma/gcrma etc   James MacDonald
• [BioC] SAM : warning messages problem   James MacDonald
• [BioC] question on making affy environment   Straubhaar, Juerg
• [BioC] questions about Affy package from new user: onemore question   Lizhe Xu
• FW: [BioC] questions about Affy package from new user: onemore question   Lizhe Xu
• [BioC] limma model to treat replicate spots   Joyce Gu
  • [BioC] limma model to treat replicate spots   Matthew Ritchie
• [BioC] questions about Affy package from new user: onemore question   James MacDonald
• [BioC] BioConductor: Affy Package   Julius Viloria
• [BioC] Quantile normalization vs. data distributions   paul.boutros at utoronto.ca
• [BioC] utils required for EBarrays   Marcus Davy
• [BioC] warning messages in gcrma   Lizhe Xu
  • [BioC] warning messages in gcrma   paolo.sirabella at uniroma1.it
• [BioC] Confusion for choosing package for microarray data analysis   Yi Zou
  • [BioC] Confusion for choosing package for microarray data analysis   Vincent Carey 525-2265
• [BioC] limma imageplot   Anna Cao
  • [BioC] limma imageplot   Gordon Smyth
• [BioC] gcrma news   Rafael A. Irizarry
• [BioC] Affy's 100 normalization genes   Hinrich Goehlmann
• FW: [BioC] more multtest problems   michael watson (IAH-C)
• [BioC] Bug in marrayInput for Windows   michael watson (IAH-C)
• [BioC] Beginner's question: ebayes   Eliana Lucchinetti Zaugg
  • [BioC] Beginner's question: ebayes   Vincent Carey 525-2265
  • [BioC] Beginner's question: ebayes   Adaikalavan Ramasamy
• [BioC] Where are the new metadata packages   Claudio Lottaz
  • [BioC] Where are the new metadata packages   Jeff Gentry
• [BioC] Subsetting Affybatch objects by gene list.   Horswell, Stuart
  • [BioC] Subsetting Affybatch objects by gene list.   Robert Gentleman
• [BioC] MOE430 A and B   Aedin
• [BioC] Installation of bioconductor   Eneas Aguirre
  • [BioC] Installation of bioconductor   Jeff Gentry
• [BioC] QualityWeights (using limma)   joycel_balaena.bio.vu.nl
  • [BioC] QualityWeights (using limma)   Gordon Smyth
• [BioC] Where are the new metadata packages   John Zhang
• [BioC] canine annotation library package   LIANHE SHAO
• [BioC] Canine annotation package   LIANHE SHAO
• [BioC] Quantile normalization vs. data distributions   Arne.Muller at aventis.com
  • [BioC] Quantile normalization vs. data distributions   Naomi Altman
• [BioC] Re: quantile normalization vs. data distributions   Leslie Cope
• [BioC] Warning message with dChip method   Lizhe Xu
  • [BioC] Warning message with dChip method   Rafael A. Irizarry
• [BioC] Multifactorial analysis using RMA and LIMMA with Affymetrix arrays   Jordi Altirriba Gutiérrez
• [BioC] multifactorial analysis with RMA and LIMMA of Affymetrix arrays   Jordi Altirriba Gutiérrez
• [BioC] Questions about exporting data out of R   Lizhe Xu
• [BioC] warning messages in gcrma   James MacDonald
• [BioC] Multifactorial analysis with RMA and LIMMA of Affymetrix microarrays   Jordi Altirriba Gutiérrez
  • [BioC] Multifactorial analysis with RMA and LIMMA of Affymetrix microarrays   Gordon Smyth
• [BioC] Questions about exporting data out of R   James MacDonald
• [BioC] 1.4.X versions of the metadata   Jeff Gentry
• [BioC] Limma: Error with dupcor.series/duplicateCorrelatoin function   Valtteri Wirta
  • [BioC] Limma: Error with dupcor.series/duplicateCorrelatoin function   Gordon Smyth
• [BioC] heatmap ColSideColors option   Tao Shi
• [BioC] Confusion for choosing package for microarray data analysis   Chris Wilkinson
  • [BioC] Confusion for choosing package for microarray data analysis   Yi Zou
• [BioC] Subsetting Affybatch objects by gene list.   Matthew Hannah
  • [BioC] Subsetting Affybatch objects by gene list.   Rafael A. Irizarry
• [BioC] Questions about exporting data out of R   Matthew Hannah
• [BioC] gcrma news   Matthew Hannah
  • [BioC] gcrma news   Rafael A. Irizarry
• [BioC] data transformation   Rohit Ghai
  • [BioC] data transformation   Wolfgang Huber
• [BioC] topTable question in limma   pingzhao Hu
  • [BioC] topTable question in limma   Matthew Ritchie
• [BioC] Problems loading microarray data into Bioconductor   McKinstry, Craig A
  • [BioC] Problems loading microarray data into Bioconductor   Jean Yee Hwa Yang
• [BioC] update topTable question in limma   pingzhao Hu
• [BioC] loading problem of AnnBuilder package   Kiran
• [BioC] limma, background correction and duplicate spots   Helen Cattan
• [BioC] Multifactorial analysis with RMA and LIMMA of Affymetrix microarrays   Gordon Smyth
• [BioC] kooperberg correction   Jason Skelton
  • [BioC] kooperberg correction   Matthew Ritchie
    • [BioC] kooperberg correction   Jason Skelton
      • [BioC] kooperberg correction   Matthew Ritchie
• [BioC] Retrieve measures   marchiem at libero.it
  • [BioC] Retrieve measures   Matthew Ritchie
• [BioC] limma: topTable   Julia Engelmann
• [BioC] Retrieve measures   marchiem at libero.it
• [BioC] loading problem of AnnBuilder package   John Zhang
• [BioC] limma: topTable   Gordon Smyth
  • [BioC] limma: topTable   Julia Engelmann
    • [BioC] limma: topTable   Gordon K Smyth
  • [BioC] Distribution Derivation   E Motakis, Mathematics
• [BioC] Subsetting Affybatch Objects by Gene list.   Horswell, Stuart
• [BioC] justGCRMA normalisation options?   Andrew Harrison
  • [BioC] justGCRMA normalisation options?   Rafael A. Irizarry
  • [BioC] justGCRMA normalisation options?   Ben Bolstad
• [BioC] Re: ygs98 annotation   John Zhang
• [BioC] justGCRMA normalisation options?   Arne.Muller at aventis.com
• [BioC] Re: [R] How to collect trees grown by rpart   Sean Davis
• [BioC] rma and SNOMAD   Lizhe Xu
• [BioC] justGCRMA normalisation options?   James MacDonald
• [BioC] rma and SNOMAD, second thought   Lizhe Xu
  • [BioC] rma and SNOMAD, second thought   Rafael A. Irizarry
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] how deal with multiplicate affy probes?   Johnnidis, Jonathan
  • [BioC] how deal with multiplicate affy probes?   Michael Seewald
    • [BioC] how deal with multiplicate affy probes?   Lawrence Paul Petalidis
• [BioC] Error with run GCRMA and the old Hu6800 Genechips...   Stiles, David (NIH/NIDDK)
• [BioC] how deal with multiplicate affy probes?   Arne.Muller at aventis.com
• [BioC] Problem with limma - psigamma?   Matthew Hannah
  • [BioC] Problem with limma - psigamma?   Gordon K Smyth
• [BioC] Problem with limma - psigamma?   Matthew Hannah
  • [BioC] Problem with limma - psigamma?   Martin Maechler
• [BioC] how deal with multiplicate affy probes?   Jeff Gentry
• [BioC] Error with run GCRMA and the old Hu6800 Genechips...   James MacDonald
• [BioC] Error with run GCRMA and the old Hu6800 Genechips...   Stiles, David (NIH/NIDDK)
• [BioC] Problem with mas5calls, bugs?   Lizhe Xu
• [BioC] gcrma and justRMA   Arne.Muller at aventis.com
• [BioC] Problem with limma - psigamma?   Gordon Smyth
• [BioC] reading background from imagene output   marchiem at libero.it
  • [BioC] reading background from imagene output   Matthew Ritchie
    • [BioC] reading background from imagene output   Gordon Smyth
      • [BioC] Affy : Cel/Cdf files   Willy Wynant
• [BioC] Problem with limma - psigamma?   Matthew Hannah
• [BioC] (no subject)   Eliana Lucchinetti Zaugg
  • [BioC] (no subject)   Gordon Smyth
    • [BioC] eBayes   E Motakis, Mathematics
• [BioC] LIMMA, FDR and B-statistic   Jordi Altirriba Gutiérrez
  • [BioC] LIMMA, FDR and B-statistic   Gordon Smyth
• [BioC] fixed and random effect   Martin Olivier
• [BioC] New BioC packages   Jeff Gentry
• [BioC] limmaGUI problem   Ron Ophir
• [BioC] package simpleaffy   Gareth Hughes
  • [BioC] package simpleaffy   Jeff Gentry
• [BioC] package simpleaffy   Crispin Miller
• [BioC] package simpleaffy   James MacDonald
• [BioC] Problem with latest win32 package installs   Matthew Hannah
  • [BioC] Problem with latest win32 package installs   Jeff Gentry
• [BioC] Affy : Cel/Cdf files   James MacDonald
• [BioC] mas5calls Problem   Lizhe Xu
• [BioC] aligning rownames in heatmap   nee joe
  • [BioC] aligning rownames in heatmap   Susan Holmes
• [BioC] aligning rownames in heatmap   nee joe
• [BioC] Re: limmaGUI problem   James Wettenhall
  • [BioC] Re: limmaGUI problem - additional thought   James Wettenhall
• [BioC] R/ESS/Bioc* mailing lists: 2 hour time out -- 6 hours from now   Martin Maechler
• [BioC] installing affy   Enrico Carlon
  • [BioC] installing affy   Jeff Gentry
• [BioC] Problem with latest win32 package installs   Matthew Hannah
• [BioC] Course in analysis of micoarray data using Bioconductor and R   Malene Herbsleb
  • [BioC] Course in analysis of micoarray data using Bioconductor and R   Vincent Carey 525-2265
• [BioC] (no subject)   Steve Moore
  • [BioC] (no subject)   Ben Bolstad
• [BioC] Segmentation fault   Mayte Suarez-Farinas
  • [BioC] Segmentation fault   Jeff Gentry
    • [BioC] Segmentation fault   Mayte Suarez-Farinas
      • [BioC] Segmentation fault   Jeff Gentry
      • [BioC] Segmentation fault   Mayte Suarez-Farinas
      • [BioC] CV cut off   Lawrence-Paul Petalidis
• [BioC] how deal with multiplicate affy probes?   Johnnidis, Jonathan
• [BioC] how deal with multiplicate affy probes?   Arne.Muller at aventis.com
• [BioC] how deal with multiplicate affy probes?   Lawrence Paul Petalidis
• [BioC] double normalization   Arne.Muller at aventis.com
  • [BioC] double normalization   Naomi Altman
• [BioC] how deal with multiplicate affy probes?   Ron Ophir
  • [BioC] how deal with multiplicate affy probes?   Sean Davis
    • [BioC] how deal with multiplicate affy probes?   Michael Seewald
      • [BioC] how deal with multiplicate affy probes?   Sean Davis
      • [BioC] how deal with multiplicate affy probes?   Michael Seewald
• [BioC] Re: Bioconductor Digest, Vol 13, Issue 56   Mayte Suarez-Farinas
• [BioC] simpleaffy package   Han, Hillary
  • [BioC] simpleaffy package   Jeff Gentry
• [BioC] affy package   Jin, Ying
  • [BioC] affy package   Ben Bolstad
  • [BioC] affy package   Jeff Gentry
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Filtering Affymetrix data towards class discovery   Tan, MinHan
• [BioC] learning Bioconductor - some help for newbies   Naomi Altman
• [BioC] MAS vs gcrma, rma and Li-Wong method in Affy package for TC study   Lizhe Xu
• [BioC] gcrma 1.0.6 error: couldn't find function "gcrma.bg.transformation"   Dick Beyer
• [BioC] Bug with R 1.9.0 beta (3/23) and PAMR?   Tan, MinHan
• [BioC] Bug with R 1.9.0 beta (3/23) and PAMR?   Liaw, Andy
• [BioC] new version of globaltest   Goeman, J.J. (MSTAT)
• [BioC] SAM analysis question   J. Mcelwee
• [BioC] Problems in limma package   Binita Dutta
  • [BioC] Problems in limma package   Gordon Smyth
• [BioC] (no subject)   Johan Lindberg
• [BioC] Different levels of replicates and how to create a correct targets file out of that.   Johan Lindberg
  • [BioC] Different levels of replicates and how to create a correct targets file out of that.   Gordon Smyth
    • [BioC] Different levels of replicates and how to create a correct targets file out of that.   Johan Lindberg
• [BioC] Warning message.   Johan Lindberg
  • [BioC] Warning message.   Gordon Smyth
• [BioC] SAM analysis question   Sun, Zhifu
• [BioC] SAM q-values   E Motakis, Mathematics
  • [BioC] SAM q-values   Holger Schwender
• [BioC] Mapping   Juan Pablo Grassi
  • [BioC] Mapping   Sean Davis
• [BioC] Problem with yeastPkgBuilder   Juan Pablo Grassi
• [BioC] Problems installing affy package.   Debjani Bhowmick
  • [BioC] Problems installing affy package.   Jeff Gentry
• [BioC] limma image analysis   Joerg Schaber
  • [BioC] limma image analysis   Gordon Smyth
• [BioC] Re: trouble installing "affy" package   Debjani Bhowmick
• [BioC] design matrix for timecourse experiment   Gareth Bloomfield
• [BioC] Problem with yeastPkgBuilder   John Zhang
• [BioC] technical replicates (again!): a summary   Ramon Diaz-Uriarte
  • [BioC] Addendum: technical replicates (again!): a summary   Ramon Diaz-Uriarte
  • [BioC] technical replicates (again!): a summary   Naomi Altman
• [BioC] CELfiles names in a matrix   Joshi, Nina (NIH/NCI)

Last message date: Wed Mar 31 23:59:11 CEST 2004
Archived on: Wed Mar 31 23:59:28 CEST 2004

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