[BioC] warning messages in gcrma

[paolo.sirabella at uniroma1.it]

I got the same kind of warnings referred in the attached post by Lizhe Xu. The 
configuration is R1.8.1/BioC1.3/Linux .
I have no idea of the meaning of these warnings and if they are significant.

Does anyone give us some hints ?

Thanks

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Paolo Sirabella, PhD
University of Rome - "La Sapienza"
Dept. of Human Physiology and Pharmacology - Building of Human Physiology
P.le Aldo Moro, 5 - 00185 Roma - Italy
Web http://w3.uniroma1.it/cisb/Cisb/members/sirabella

Simplex Sigillum Veri
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On 15 Mar 2004 at 15:22, Lizhe Xu wrote:

> I just tried to run gcrma and got 30 warnings. I wonder if there are something I did wrong and if these warning affect my results. Thanks.
> 
> > gcrmaDataB<-gcrma(DataB)
> Loading required package: hgu133bprobe 
> Loading required package: matchprobes 
> background correction: gcrma 
> normalization: quantiles 
> PM/MM correction : pmonly 
> expression values: medianpolish 
> background correcting...There were 30 warnings (use warnings() to see them)
> done.
> normalizing...done.
> 22645 ids to be processed
> .........
> > warnings()
> Warning messages:
> 1: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 2: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 3: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 4: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 5: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 6: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 7: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 8: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 9: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 10: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 11: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 12: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 13: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 14: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 15: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 16: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 17: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 18: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 19: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 20: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 21: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 22: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 23: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 24: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 25: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 26: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 27: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 28: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 29: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 30: multi-argument returns are deprecated in: return(y = yhat, wt) 
> 
> Lizhe