[BioC] gcrma news

Rafael A. Irizarry ririzarr at jhsph.edu
Wed Mar 17 15:08:04 MET 2004


hopefully. our goal is to be almost as efficient as the current
justRMA function. in any case we will try to put out some results for
memory and speed.


On Wed, 17 Mar 2004, Matthew Hannah wrote:

> Excellent news that there will be a speedier version. Have you yet been
> able to get an idea of how much faster it might be? 
> 
> I eventually want to 'GCRMA' around 50-60 chips. Is this likely to (ever?)
> become possible on a modest PC (2GHz, 1MB RAM, win2k)?
> 
> If not is it possible to introduce a batch method into the package for
> those wanting to deal with higher numbers of chips.
> 
> If the answer to both is no then what sort of PC have people had success
> with for different chip numbers, such as 50, 75, 100? The chips I'm using
> are ATH1 which have 22810 x 11 probepairs.
> 
> Thanks
> Matt
> 
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