[BioC] Segmentation fault

[Mayte Suarez-Farinas]

Hi all!

I installed version 1.9 of R and also devel version of Bioconductor 
libraries. But I found the following problems. I will be grateful if somebody else can give me 
some hint....


1. I couldn't install all BioC package througth  getBioC(relLevel="devel",libName="all")
  	Loading required package: reposTools
	Warning messages:
	1: 'package.description' is deprecated.
	Use 'packageDescription' instead.
	See help("Deprecated")
	2: 'package.description' is deprecated.
	Use 'packageDescription' instead.
	See help("Deprecated")
	3: cannot open: HTTP status was `404 Not Found'
	Note: http://www.bioconductor.org/repository/release1.2/package/Source 
	does not seem to have a valid repository, skipping
	Error in repPkgInfos(reposEntry, pkg, type) :
        No direct or inherited method for function "repPkgInfos" for this call

2.  Then I just install the default packages (getBioC(relLevel="devel")) 
But I got the following Segmentation fault error while I run mva.pairs 
function. See output:

	library(affy)
	Welcome to Bioconductor
        	 Vignettes contain introductory material.  To view,
	         simply type: openVignette()
        	 For details on reading vignettes, see
	         the openVignette help page.
	Warning message:
	'package.description' is deprecated.
	Use 'packageDescription' instead.
	See help("Deprecated")
	> library(affydata)
	> data(Dilution)
	> mva.pairs(Dilution)
	Error in log(x, base) : Non-numeric argument to mathematical function
	> mva.pairs(exprs(Dilution))
	Segmentation fault

Here the system information:

platform i686-pc-linux-gnu
arch     i686
os       linux-gnu
system   i686, linux-gnu
status   beta
major    1
minor    9.0
year     2004
month    03
day      22
language R


-- 
Mayte Suarez Farinas
The Rockefeller University
1230 York Avenue, Box 212
New York, NY 10021
phone: 1-212-327-8186
fax:   1-212-327-7422