[BioC] Error with run GCRMA and the old Hu6800 Genechips...

[Stiles, David (NIH/NIDDK)]

Dear Jim,

	Thanks for the reply but I have already downloaded and installed the
hu6800probe package from the metadata webpage.  Do you have any other
suggestions?      

David Stiles
Technologist 
NIH/NIDDK Microarray Core Facility
Phone: (301) 496-0175
Fax: (301) 480-0855 


-----Original Message-----
From: James MacDonald [mailto:jmacdon at med.umich.edu] 
Sent: Monday, March 22, 2004 11:16 AM
To: Stiles, David (NIH/NIDDK); bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Error with run GCRMA and the old Hu6800 Genechips...

You need to go to the metaData page on BioC and get the hu6800probe
package. Once you have this installed, GCRMA will be happy.

Best,

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> "Stiles, David (NIH/NIDDK)" <DavidST at intra.niddk.nih.gov> 03/20/04
07:11PM >>>
Dear Bioconductor Support Group,

	I'm currently trying to run GCRMA on a set of old Hu6800
GeneChip
CEL files and keep getting is strange error: "Error in get(x, envir,
mode,
inherits) : variable "hu6800probe" was not found".  If anyone has any
suggestions on how I can fix this problem just send me an email or post
a
reply to this message board.  I have downloaded and installed all
necessary
packages and I am using the alpha build of version 1.9.0 of RGui for
Windows.  If you need additional information just let me know.  Thank
you in
advance for helping me with this problem.  



Yours truly,
David Stiles
Technologist 
NIH/NIDDK Microarray Core Facility
Phone: (301) 496-0175
Fax: (301) 480-0855 

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