[BioC] kooperberg correction
Jason Skelton
jps at sanger.ac.uk
Thu Mar 18 12:20:48 MET 2004
Hi
using R 1.8.0
limma 1.5.1
Attempting to use the Kooperberg background correction in Limma
> RGmodel <- kooperberg(FILES, layout=LAYOUT, fg="mean", bg="mean")
&
> RGmodel <- kooperberg(FILES, layout=LAYOUT, fg="median", bg="median")
both return following error:
Error in integrate(.numeratorBayesianAdjustedFG, ifelse((fg - bg - 4 * :
a limit is missing
any ideas much appreciated
thanks
Jason
--
--------------------------------
Jason Skelton
Pathogen Microarrays
Wellcome Trust Sanger Institute
Hinxton
Cambridge
CB10 1SA
Tel +44(0)1223 834244 Ext 7123
Fax +44(0)1223 494919
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