[BioC] SAM : warning messages problem

[Holger Schwender]

Hi,

please use version 1.0.6 of the siggenes package. You will find this version
in the developmental section of Bioconductor.

Holger


> Hi,
> 
> I am using siggenes package and I am encountering problems with warning 
> messages with the function sam.
> 
> For example, if I type :
> 
>
res<-sam(data,3:11,12:88,B=1000,alpha.s0=seq(0,1,0.02),factor.s0=1.4826,delta.fdr=(1:10)/10,rand=123,vec.lambda.p0=(0:95)/100,ngenes=NA,iteration=10,initial.delta=(1:20)/10)
> 
> I've got as result the SAM analysis and the following answer:
> 
> Warning messages :
> 1:multi-argument returns are deprecated in : 
> return(r,s,r.perm,s.perm,Z,mat.samp,var.0.genes,NA.genes)
> 2:multi-argument returns are deprecated in : 
> return(alpha.hat,s.zero,cv,cv.zero)
> 3:multi-argument returns are deprecated in : return(p0,spline.out,vec.p0)
> 4:multi-argument returns are deprecated in : return(tab.fdr,mat.fdr,p0)
> 5 :multi-argument returns are deprecated in : 
> return(d,d.sort,s,d.bar,d.perm,mat.samp,s0,FDR,p0,fdr.ngenes,
> 
> I installed the R.1.8.1 version.
> 
> Could you help me ?
> 
> Thank you
> 
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