[BioC] Bug with R 1.9.0 beta (3/23) and PAMR?

[Tan, MinHan]

Hi,
 
I hope this is the right place for this bug report:
 
I am running R.1.9.0 beta (3/23) and PAMR 1.12.1 [most updated version]
on a Win XP machine.
 
khan.data <- pamr.from.excel("summary-filter.txt", 75,
sample.labels=TRUE)
pamr.menu(khan.data)
 
I was running pamr.menu and ran into this error at pamr.cv for my data.
 
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Error: 'codes' is defunct.
 
(The bioconductor daily package update states that there should be no
problems with the pamr package with this version of R)
 
This error does not occur with R 1.8.1, with the same data.
 
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Regards,
Min-han Tan

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