November 2007 Archives by date

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Starting: Thu Nov 1 01:20:13 CET 2007
Ending: Fri Nov 30 22:13:18 CET 2007
Messages: 414

• [BioC] Rgraphviz edge attributes can't be changed on Mac   Luo Weijun
• [BioC] Rgraphviz edge attributes can't be changed on Mac   Li.Long at isb-sib.ch
• [BioC] BIRD 2008   Prof. Roland Wagner
• [BioC] warning message for duplicateCorrelation   dorthe.belgardt at medisin.uio.no
• [BioC] again: warning message for duplicateCorrelation (Limma)   dorthe.belgardt at medisin.uio.no
• [BioC] Opinions on array design, normalization, and linear modeling with LIMMA   Jianping Jin
• [BioC] Affymetrix Command Console CEL files   Khan, Sohail
• [BioC] RMA vs gcRMA on 2 groups of samples   Bogdan Tanasa
• [BioC] motif searching with variable length gaps   Houseman, Heather
• [BioC] Affymetrix Command Console CEL files   bmb at bmbolstad.com
• [BioC] Affymetrix Command Console CEL files   Benilton Carvalho
• [BioC] Affymetrix Command Console CEL files   Henrik Bengtsson
• [BioC] markersymol filter problem   Marc Carlson
• [BioC] Opinions on array design, normalization, and linear modeling with LIMMA   Yong Yin
• [BioC] exonmap package - MySQL error   Dykema, Karl
• [BioC] Installing beadarray   Krys Kelly
• [BioC] Opinions on array design, normalization, and linear modeling with LIMMA   Jianping Jin
• [BioC] Installing beadarray   Joern Toedling
• [BioC] Installing beadarray   Sean Davis
• [BioC] Installing beadarray   Krys Kelly
• [BioC] limma reading Agilent One-Color Data   elliott harrison
• [BioC] motif searching with variable length gaps   Herve Pages
• [BioC] Opinions on array design, normalization, and linear modeling with LIMMA   Kasper Daniel Hansen
• [BioC] Installing beadarray   Kasper Daniel Hansen
• [BioC] warning message for duplicateCorrelation   Herve Pages
• [BioC] warning message for duplicateCorrelation   Shripad Sinari
• [BioC] motif searching with variable length gaps   Oliver Bembom
• [BioC] motif searching with variable length gaps   Houseman, Heather
• [BioC] motif searching with variable length gaps   Oliver Bembom
• [BioC] Affymetrix Command Console CEL files   Khan, Sohail
• [BioC] warning message for duplicateCorrelation   Herve Pages
• [BioC] motif searching with variable length gaps   Oliver Bembom
• [BioC] motif searching with variable length gaps   Herve Pages
• [BioC] warning message for duplicateCorrelation   Gordon Smyth
• [BioC] Rgraphviz edge attributes can't be changed on Mac   Florian Hahne
• [BioC] Beadarray:Loading two summary data files   Cherie Ochsenfeld
• [BioC] org.Dm.egACCNUM2EG   Tiandao Li
• [BioC] Opinions on array design, normalization, and linear modeling with LIMMA   J.delasHeras at ed.ac.uk
• [BioC] Using beadarray for bead level data, what is the ProbeID with 1000's of beads?   Krys Kelly
• [BioC] maSigPro questions   Ingrid H. G. Østensen
• [BioC] Using beadarray for bead level data, what is the ProbeID with 1000's of beads?   Mark Dunning
• [BioC] Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"   Amin Moghaddasi
• [BioC] RMA vs gcRMA on 2 groups of samples   Naomi Altman
• [BioC] RMA vs gcRMA on 2 groups of samples   Bogdan Tanasa
• [BioC] Beadarray:Loading two summary data files   Matt Ritchie
• [BioC] (no subject)   Thomas Elliott
• [BioC] Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"   Li.Long at isb-sib.ch
• [BioC] Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"   Amin Moghaddasi
• [BioC] org.Dm.egACCNUM2EG   Marc Carlson
• [BioC] (no subject)   Joern Toedling
• [BioC] (no subject)   Robert Gentleman
• [BioC] RMA vs gcRMA on 2 groups of samples   Naomi Altman
• [BioC] RMA vs gcRMA on 2 groups of samples   Robert Gentleman
• [BioC] PCR Primer Design tools in BioC?   Caroline Johnston
• [BioC] RMA vs gcRMA on 2 groups of samples   James W. MacDonald
• [BioC] PCR Primer Design tools in BioC?   Herve Pages
• [BioC] org.Dm.egACCNUM2EG   Tiandao Li
• [BioC] RMA vs gcRMA on 2 groups of samples   Robert Gentleman
• [BioC] org.Dm.egACCNUM2EG   Herve Pages
• [BioC] org.Dm.egACCNUM2EG   Tiandao Li
• [BioC] Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"   Amin Moghaddasi
• [BioC] org.Dm.egACCNUM2EG   Herve Pages
• [BioC] org.Dm.egACCNUM2EG   Tiandao Li
• [BioC] org.Dm.egACCNUM2EG   Herve Pages
• [BioC] RMA vs gcRMA on 2 groups of samples   Bogdan Tanasa
• [BioC] Job opening at Merck, NJ   Liaw, Andy
• [BioC] (no subject)   Meike Thomas
• [BioC] Using beadarray for bead level data, what is the ProbeID with 1000's of beads?   Wei Shi
• [BioC] BeadArray: Associating a gene list file to probe summary data.   Cherie Ochsenfeld
• [BioC] MICROARRAY AND R COURSES at Imperial College Dec 2007   North, Bernard V
• [BioC] Wir suchen neue Kooperationspartnern oder Partner.   Wir suchen neue Kooperationspartnern oder Partner.
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Paul Shannon
• [BioC] Question Loading Imagene Files into Limma   Sally
• [BioC] Question Loading Imagene Files into Limma   Sally
• [BioC] (no subject)   James W. MacDonald
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Marc Carlson
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Paul Shannon
• [BioC] tpmap2bpmap in affxparser   Daniel Zak
• [BioC] tpmap2bpmap in affxparser   Daniel Zak
• [BioC] using GSEABase objects to perform GSEA   burak kutlu
• [BioC] tpmap2bpmap in affxparser   Kasper Daniel Hansen
• [BioC] how to build a GOstats-compatible annotation package forplasmodium falciparum?   Al Ivens
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Adrian Alexa
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Dave Berger
• [BioC] cannot allocate vector of size 73 kb, in made4   Amin Moghaddasi
• [BioC] cannot allocate vector of size 73 kb, in made4   Kasper Daniel Hansen
• [BioC] BeadArray: Associating a gene list file to probe summary data.   Matt Ritchie
• [BioC] failure in GDS2eSet() in package GEOquery   Wittner, Ben, Ph.D.
• [BioC] failure in GDS2eSet() in package GEOquery   Saroj Mohapatra
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Marc Carlson
• [BioC] tpmap2bpmap in affxparser   Daniel Zak
• [BioC] Affymetrix reannotation   Samuel Wuest
• [BioC] failure in GDS2eSet() in package GEOquery   Sean Davis
• [BioC] Affymetrix reannotation   Marc Carlson
• [BioC] using GSEABase objects to perform GSEA   Martin Morgan
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Paul Shannon
• [BioC] Limma and Imagene flags   Sally
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Marc Carlson
• [BioC] GO analysis for time-series data   Srinivas Iyyer
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Paul Shannon
• [BioC] GO analysis for time-series data   Ana Conesa
• [BioC] Problem running eBayes/lmFit   elliott harrison
• [BioC] Combine dataset from different chip   Tom
• [BioC] Problem running eBayes/lmFit   smohapat at vbi.vt.edu
• [BioC] Problem running eBayes/lmFit   elliott harrison
• [BioC] Affymetrix reannotation   Samuel Wuest
• [BioC] Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?   dorthe.belgardt at medisin.uio.no
• [BioC] how to build a GOstats-compatible annotation package for plasmodium falciparum?   Marc Carlson
• [BioC] Limma and Imagene flags   Leonardo Rocha
• [BioC] tweaks for the heatmap ()?   Simon Lin
• [BioC] Affymetrix reannotation   James W. MacDonald
• [BioC] GOTERM   Mete Civelek
• [BioC] Question about a packages not yet in Bioconductor: AffyProbeMiner in R260 under windows   phguardiol at aol.com
• [BioC] GOTERM   Robert Gentleman
• [BioC] Question about a packages not yet in Bioconductor: AffyProbeMiner in R260 under windows   Robert Gentleman
• [BioC] Re : Question about reannotated Affy annotation files - Question about AffyProbeMiner in R260 under windows   phguardiol at aol.com
• [BioC] Re : Question about reannotated Affy annotation files - Question about AffyProbeMiner in R260 under windows   Jarno Tuimala
• [BioC] optimizazion cluster in Heatmap   Alessandro Fazio
• [BioC] Median-Interquartile Normalization   McGee, Monnie
• [BioC] Using beadarray for bead level data, what is the ProbeID with 1000's of beads?   Krys Kelly
• [BioC] Question about a packages not yet in Bioconductor: AffyProbeMiner in R260 under windows   James W. MacDonald
• [BioC] optimizazion cluster in Heatmap   James W. MacDonald
• [BioC] how can I use the limma result as input in topGo   Caroline Reiff
• [BioC] Limma: factorial design and batch effect   Jason Pear
• [BioC] optimizazion cluster in Heatmap   Naomi Altman
• [BioC] how can I use the limma result as input in topGo   James W. MacDonald
• [BioC] how can I use the limma result as input in topGo   Adrian Alexa
• [BioC] made4, memory issues   aedin culhane
• [BioC] error in qc AffyQCReport package   Mayte Suarez-Farinas
• [BioC] how to estimate dye effect based on a very specific experiment design   yan zhou
• [BioC] tweaks for the heatmap ()?   Florian Hahne
• [BioC] tweaks for the heatmap ()?   James W. MacDonald
• [BioC] The mis-match platform read by bioconductor --> MOE430B   Alex Tsoi
• [BioC] The mis-match platform read by bioconductor --> MOE430B   bmb at bmbolstad.com
• [BioC] how to read in affy snp 500K arrays   affy snp
• [BioC] how to read in affy snp 500K arrays   Benilton Carvalho
• [BioC] how to read in affy snp 500K arrays   affy snp
• [BioC] Limma batch effect   Jason Pear
• [BioC] normalization between tissues   Chun (Jimmie) Ye
• [BioC] NA geneSymbol with lumi   Sebastien Gerega
• [BioC] Illumina Beadarray negative data   affy snp
• [BioC] Workshop in Cambridge UK, 31.3.-4.4.2008: High Dimensional Statistics in Biology   Wolfgang Huber
• [BioC] Combine dataset from different chip   Tom
• [BioC] hyperGTest and HyperGParams   João Fadista
• [BioC] Limma batch effect   Naomi Altman
• [BioC] hyperGTest and HyperGParams   James W. MacDonald
• [BioC] Combine dataset from different chip   Marc Carlson
• [BioC] Illumina Beadarray negative data   Sean Davis
• [BioC] how to read in affy snp 500K arrays   Benilton Carvalho
• [BioC] how to read in affy snp 500K arrays   affy snp
• [BioC] Problem of using MultiClass SAM (siggenes package)   呂若陽
• [BioC] Problem of using MultiClass SAM (siggenes package)   Holger Schwender
• [BioC] About CLAC package   affy snp
• [BioC] About CLAC package   Matthew Keller
• [BioC] About CLAC package   Robert Gentleman
• [BioC] About CLAC package   affy snp
• [BioC] About CLAC package   affy snp
• [BioC] A question about installation of cghFLasso package   affy snp
• [BioC] A question about installation of cghFLasso package   Sean Davis
• [BioC] A question about installation of cghFLasso package   affy snp
• [BioC] hyperGTest and HyperGParams   Robert Gentleman
• [BioC] A question about installation of cghFLasso package   Sean Davis
• [BioC] Illumina Beadarray negative data   Wei Shi
• [BioC] BIRD 2008   Prof. Roland Wagner
• [BioC] log scale in limma package   Boks, M.P.M.
• [BioC] Illumina Beadarray negative data   affy snp
• [BioC] Illumina Beadarray negative data   Wei Shi
• [BioC] Illumina Beadarray negative data   affy snp
• [BioC] Illumina Beadarray negative data   Wei Shi
• [BioC] normalize.AffyBatch.invariantset   Markus Schmidberger
• [BioC] How to load annotation package dynamically?   Chanchal Kumar
• [BioC] Help in coinertia analysis - MADE4   Narinder Singh Sahni
• [BioC] normalize.AffyBatch.invariantset   James W. MacDonald
• [BioC] How to load annotation package dynamically?   James W. MacDonald
• [BioC] FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis   Ana Conesa
• [BioC] beadarray package: problem with object made by createBeadSummaryData   Krys Kelly
• [BioC] Biological, technical or pooled replicates?   Cei Abreu-Goodger
• [BioC] RedHat Linux   Casey,Richard
• [BioC] RedHat Linux   Francois Pepin
• [BioC] RedHat Linux   James W. MacDonald
• [BioC] R_HOME and biocep   Leonardo Kenji Shikida
• [BioC] beadarray package: problem with object made by createBeadSummaryData   Matt Ritchie
• [BioC] tweaks for the heatmap ()?   aedin culhane
• [BioC] how to read in affy snp 500K arrays   pingzhao Hu
• [BioC] R_HOME and biocep   Herve Pages
• [BioC] Announcement: biomaRt attribute/filter name changes involving gene symbols   Steffen
• [BioC] CGH DNAcopy plot multiple samples on one plot   Daniel Brewer
• [BioC] CGH DNAcopy plot multiple samples on one plot   Ramon Diaz-Uriarte
• [BioC] CGH DNAcopy plot multiple samples on one plot   Gavin Kelly
• [BioC] Minimal group sizes in permutation tests   Benjamin Otto
• [BioC] Minimal group sizes in permutation tests   James W. MacDonald
• [BioC] Minimal group sizes in permutation tests   Claus-Dieter Mayer
• [BioC] CGH DNAcopy plot multiple samples on one plot   Sean Davis
• [BioC] Minimal group sizes in permutation tests   Robert Gentleman
• [BioC] Biological, technical or pooled replicates?   Lynn Amon
• [BioC] unclear on error in affxparser   Elizabeth Purdom
• [BioC] unclear on error in affxparser   Kasper Daniel Hansen
• [BioC] Help with base file in AnnBuilder   Johnstone, Alice
• [BioC] Help with base file in AnnBuilder   James W. MacDonald
• [BioC] Help with base file in AnnBuilder   Johnstone, Alice
• [BioC] Error in loading package preprocessCore   Weiwei Shi
• [BioC] Error in loading package preprocessCore   Kasper Daniel Hansen
• [BioC] Help with base file in AnnBuilder   Marc Carlson
• [BioC] Error in loading package preprocessCore   Weiwei Shi
• [BioC] Help with base file in AnnBuilder   Johnstone, Alice
• [BioC] Help with base file in AnnBuilder   Marc Carlson
• [BioC] Help with base file in AnnBuilder   James MacDonald
• [BioC] Help with base file in AnnBuilder   Johnstone, Alice
• [BioC] Generating heatmap of 110x3200 samples   Ruppert Valentino
• [BioC] Generating heatmap of 110x3200 samples   Florian Hahne
• [BioC] Mapping Affy probes to OperonID or ensemblID   Julian Lee
• [BioC] Reading 80 CEL files.   Pure Lu
• [BioC] beadarray package: problem with object made by createBeadSummaryData   Krys Kelly
• [BioC] Reading 80 CEL files.   Sean Davis
• [BioC] Mapping Affy probes to OperonID or ensemblID   Sean Davis
• [BioC] removal of outliers in matrix   Johannes Hanson
• [BioC] plier package   Ingrid H. G. Østensen
• [BioC] plier package   Crispin Miller
• [BioC] beadarray package: problem with object made by createBeadSummaryData   Matt Ritchie
• [BioC] Memory issues and QC'ing large datasets in simpleaffy   claire
• [BioC] removal of outliers in matrix   Saroj Mohapatra
• [BioC] dealing with technical replication and common reference in limma package   Juan C Oliveros Collazos
• [BioC] Help with base file in AnnBuilder   James W. MacDonald
• [BioC] beadarray package: problem with object made by createBeadSummaryData   Martin Morgan
• [BioC] Scaling affy CEL files   Garry Moss
• [BioC] Scaling affy CEL files   James W. MacDonald
• [BioC] Reading 80 CEL files.   Michal Blazejczyk
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] Illumina beadlevel expression data   Matt Ritchie
• [BioC] Illumina beadlevel expression data   Matt Ritchie
• [BioC] MTP error   Boel Brynedal
• [BioC] Problem with printing maQualityPlots to ps-files   Claus-Dieter Mayer
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] Illumina beadlevel expression data   Matt Ritchie
• [BioC] Question on SAM output   Alex Tsoi
• [BioC] pmindex in oligo package   Gayla Olbricht
• [BioC] pmindex in oligo package   Benilton Carvalho
• [BioC] Question on SAM output   Holger Schwender
• [BioC] plier package   Michal Blazejczyk
• [BioC] Illumina beadlevel expression data   Wei Shi
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] NA geneSymbol with lumi   Sebastien Gerega
• [BioC] NA geneSymbol with lumi   Wei Shi
• [BioC] NA geneSymbol with lumi   Paul Leo
• [BioC] pmindex in oligo package   Gayla Olbricht
• [BioC] pmindex in oligo package   Benilton Carvalho
• [BioC] Illumina beadlevel expression data   Matt Ritchie
• [BioC] GeneChip Mouse Gene 1.0 ST annotation   Marco Fabbri
• [BioC] Illumina beadlevel expression data   Ina Hoeschele
• [BioC] Illumina beadlevel expression data   Matt Ritchie
• [BioC] GeneChip Mouse Gene 1.0 ST annotation   pingzhao Hu
• [BioC] NA geneSymbol with lumi   Lynn Amon
• [BioC] GeneChip Mouse Gene 1.0 ST annotation   Marc Carlson
• [BioC] Generating heatmap of 110x3200 samples   Wolfgang Huber
• [BioC] CDF for Mouse gene 1.0 ST   Marco Fabbri
• [BioC] CDF for Mouse gene 1.0 ST   Henrik Bengtsson
• [BioC] Reading 80 CEL files.   olsen
• [BioC] Reading 80 CEL files.   lgautier at altern.org
• [BioC] Reading 80 CEL files.   Weiwei Shi
• [BioC] Reading 80 CEL files.   cstrato
• [BioC] He fish   sincerely to
• [BioC] BIRD 2008 Call for workshop proposals   Prof. Roland Wagner
• [BioC] makeGOGraph internode distance   Loren Engrav
• [BioC] CGH segmentation algorithms (snapCGH package)   João Fadista
• [BioC] CGH segmentation algorithms (snapCGH package)   Ramon Diaz-Uriarte
• [BioC] CDF for Mouse gene 1.0 ST   Michal Okoniewski
• [BioC] CFA: LASR 2008 - The Art and Science of Statistical Bioinformatics   A Gusnanto
• [BioC] CGH segmentation algorithms (snapCGH package)   pingzhao Hu
• [BioC] CDF for Mouse gene 1.0 ST   Henrik Bengtsson
• [BioC] Reading 80 CEL files.   Jeff Gentry
• [BioC] Reading 80 CEL files.   Henrik Bengtsson
• [BioC] map EST id to RefseqId or Ensemble transcript Id   shirley zhang
• [BioC] biocep project - R for the Web and the Virtual R Workbench   kchine at ebi.ac.uk
• [BioC] makeGOGraph internode distance   Robert Gentleman
• [BioC] makeGOGraph internode distance   Loren Engrav
• [BioC] map EST id to RefseqId or Ensemble transcript Id   Sean Davis
• [BioC] Analysis of Illlumina methylation array data using beadarray   Ed Schwalbe
• [BioC] was no notify   Arnold
• [BioC] VSN method   Roayaei, Jean (DMS) [Contr]
• [BioC] ROC curves in affycomp   Arteaga-Salas, Jose M
• [BioC] Open Biostatistician position with Immune Tolerance Network (Location: Bethesda, MD)   David Schmeidler
• [BioC] Variable probe binding and its impact on analysis   Srinivas Iyyer
• [BioC] Bioinformatics positions   French, Jef (NIH/NIEHS)
• [BioC] makeGOGraph internode distance   Loren Engrav
• [BioC] Variable probe binding and its impact on analysis   Sean Davis
• [BioC] Analysis of Illlumina methylation array data using beadarray   Mark Dunning
• [BioC] Reading 80 CEL files.   olsen
• [BioC] SQLquery returns "FALSE" in stead of "F"   Rudy van Eijsden
• [BioC] SQLquery returns "FALSE" in stead of "F"   Philip Lijnzaad
• [BioC] SQLquery returns "FALSE" in stead of "F"   James W. MacDonald
• [BioC] ColSideColors   Sabah khalid
• [BioC] Analysis of Illumina methylation array data using beadarray   Kellie J Archer/FS/VCU
• [BioC] getting the pm and mm indices   Donna Toleno
• [BioC] getting the pm and mm indices   James W. MacDonald
• [BioC] linear model design   Erica Leder
• [BioC] adding KEGG annotations with ABPkBuilder from E.coli   Robert Castelo
• [BioC] linear model design   James W. MacDonald
• [BioC] getting the pm and mm indices   Donna Toleno
• [BioC] aCGH normalization   affy snp
• [BioC] aCGH normalization   Vosse, S.J.
• [BioC] ColSideColors   Wolfgang Huber
• [BioC] Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?   Gordon Smyth
• [BioC] Job ad: Computational Biologist, Edinburgh University   Gary Rubin
• [BioC] aCGH normalization   Pierre Neuvial
• [BioC] microRNA data normalization   Simo.rossi
• [BioC] error using combineAffyBatch   Mayte Suarez-Farinas
• [BioC] GO graph plotting with some in color   Loren Engrav
• [BioC] rma normalization and more   Weiwei Shi
• [BioC] rma normalization and more   Ben Bolstad
• [BioC] GO graph plotting with some in color   Loren Engrav
• [BioC] about a lymphoma dataset   James Anderson
• [BioC] error using combineAffyBatch   Wolfgang Huber
• [BioC] about a lymphoma dataset   Wolfgang Huber
• [BioC] Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?   dorthe.belgardt at medisin.uio.no
• [BioC] exporting normalised expression valuse from LIMMA   Matthew Vitalone
• [BioC] Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?   Gordon Smyth
• [BioC] error using combineAffyBatch   Martin Morgan
• [BioC] Dplot - legend ?   Aparna Radhakrishnan
• [BioC] Affy 10K SNP arrays   Aparna Radhakrishnan
• [BioC] CAMDA07 Conference at Valencia. Agenda is now available   Ana Conesa
• [BioC] Query about the conditional hypergeometric test in GOstats package   Chanchal Kumar
• [BioC] One directional spatial normalisation for microarray data   michael watson (IAH-C)
• [BioC] exporting normalised expression valuse from LIMMA   J.delasHeras at ed.ac.uk
• [BioC] Affy 10K SNP arrays   James W. MacDonald
• [BioC] exporting normalised expression valuse from LIMMA   michael watson (IAH-C)
• [BioC] Query about the conditional hypergeometric test in GOstats package   James W. MacDonald
• [BioC] probeSetSummary and named vector   Ingrid H. G. Østensen
• [BioC] Query about the conditional hypergeometric test in GOstats package   Chanchal Kumar
• [BioC] Rgraphviz, deprecated imageMap   Ariel Chernomoretz
• [BioC] Rgraphviz, deprecated imageMap   Robert Gentleman
• [BioC] Query about the conditional hypergeometric test in GOstats package   Robert Gentleman
• [BioC] Rgraphviz, deprecated imageMap   Ariel Chernomoretz
• [BioC] Limma - write table??   alison waller
• [BioC] Limma - write table??   Sean Davis
• [BioC] error using combineAffyBatch   Mayte Suarez-Farinas
• [BioC] Rgraphviz, deprecated imageMap   Herve Pages
• [BioC] GO graph plotting with some in color   Robert Gentleman
• [BioC] Rgraphviz, deprecated imageMap   Ariel Chernomoretz
• [BioC] GO graph plotting with some in color   Loren Engrav
• [BioC] GO graph plotting with some in color   Robert Gentleman
• [BioC] aCGH package error: MAD   affy snp
• [BioC] LIMMA: load two-color data (Imagene format)   pingzhao Hu
• [BioC] RES: LIMMA: load two-color data (Imagene format)   Leonardo
• [BioC] RES: LIMMA: load two-color data (Imagene format)   pingzhao Hu
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Guiyuan Lei
• [BioC] RES: RES: LIMMA: load two-color data (Imagene format)   Leonardo
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   James W. MacDonald
• [BioC] Luminex Data Analysis   Khan, Sohail
• [BioC] update.packages() for bioconductor packages generates bus error in R.app for R-2.6.1 on Mac OS X   Steven McKinney
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Caroline Lemerle
• [BioC] Computational biologist position at MedImmune   Higgs, Brandon
• [BioC] a modified cdf environment   Donna Toleno
• [BioC] Array CGH from A-Z   Srinivas Iyyer
• [BioC] GO graph plotting with some in color   Loren Engrav
• [BioC] build of bioconductor on R 2.6.1 on mac os 10.5   Jason J. Evans
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Guiyuan Lei
• [BioC] custom affylmGUI menus   Stefanie De Bodt
• [BioC] build of bioconductor on R 2.6.1 on mac os 10.5   Furge, Kyle
• [BioC] Query about the conditional hypergeometric test in GOstats package   Chanchal Kumar
• [BioC] Agilent arrays information   daphne mouzaki (RI)
• [BioC] creating expression set   Yolande Tra
• [BioC] Limma - write table??   J.delasHeras at ed.ac.uk
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   James W. MacDonald
• [BioC] a modified cdf environment   James W. MacDonald
• [BioC] probeSetSummary and named vector   James W. MacDonald
• [BioC] GCRMA background correction for a subset of genes   odlc at uchicago.edu
• [BioC] Limma: doing multiple paired t-tests in one go...   Groot, Philip de
• [BioC] Using another array system but affy   Erika
• [BioC] Using another array system but affy   Erika
• [BioC] GCRMA background correction for a subset of genes   lgautier at altern.org
• [BioC] build of bioconductor on R 2.6.1 on mac os 10.5   Kasper Daniel Hansen
• [BioC] Using another array system but affy   Wolfgang Huber
• [BioC] One directional spatial normalisation for microarray data   Henrik Bengtsson
• [BioC] build of bioconductor on R 2.6.1 on mac os 10.5   Herve Pages
• [BioC] Limma: Nimblegen array data import?   Dave Berger
• [BioC] Limma: Nimblegen array data import?   Mark Robinson
• [BioC] Limma: Nimblegen array data import?   Mark Robinson
• [BioC] coerce matrix to aafTable   Georg Otto
• [BioC] marray package: maNorm function with "loes" normalization gives irrreproducable results   Rudy van Eijsden
• [BioC] biomaRt getBM errors   Nathaniel Street
• [BioC] coerce matrix to aafTable   James W. MacDonald
• [BioC] Limma: doing multiple paired t-tests in one go...   James W. MacDonald
• [BioC] Using another array system but affy   Erika
• [BioC] biomaRt getBM errors   James W. MacDonald
• [BioC] Limma: doing multiple paired t-tests in one go...   Groot, Philip de
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Guiyuan Lei
• [BioC] error in GSA   Mayte Suarez-Farinas
• [BioC] Using another array system but affy   Sean Davis
• [BioC] Limma: doing multiple paired t-tests in one go...   James W. MacDonald
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   James W. MacDonald
• [BioC] Using another array system but affy   Wolfgang Huber
• [BioC] biomaRt getBM errors   Marc Carlson
• [BioC] Limma: Nimblegen array data import?   Martin Morgan
• [BioC] Edge color knowing only outgoing node   Loren Engrav
• [BioC] Or to spot   reload as
• [BioC] MAGE-TAB tool?   Benilton Carvalho
• [BioC] Fishers Exact test, hyperGTest - GO analysis   Srinivas Iyyer
• [BioC] Fishers Exact test, hyperGTest - GO analysis ... contd..   Srinivas Iyyer
• [BioC] How to implement Stouffer's method using weights   Ochsner, Scott A
• [BioC] marray package: maNorm function with "loes" normalization gives irrreproducable results   Jean Yee Hwa Yang
• [BioC] Fishers Exact test, hyperGTest - GO analysis ... contd..   James W. MacDonald
• [BioC] Limma - Gene set test   Srinivas Iyyer
• [BioC] Limma - Gene set test   Mark Robinson
• [BioC] limma design matrix for two color arrays with common reference   zones
• [BioC] Limma - Gene set test   Di Wu
• [BioC] Oligo package and tiling arrays - PM and MM   Naira Naouar
• [BioC] New on-line tool to view microarray results   Juan C Oliveros Collazos
• [BioC] probeSetSummary and named vector   Ingrid H. G. Østensen
• [BioC] torpedo bee chief umbrella cup vulture   Hank Matos
• [BioC] aCGH library: problem with impute.lowess   Michela Ballardini
• [BioC] PCA methods for probe level data   zhi.zhang at syngenta.com
• [BioC] Limma - error reading in .gpr files   alison waller

Last message date: Fri Nov 30 22:13:18 CET 2007
Archived on: Fri Nov 30 22:13:49 CET 2007

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