[BioC] how to read in affy snp 500K arrays

affy snp affysnp at gmail.com
Fri Nov 9 03:34:48 CET 2007


Dear list,

I am analyzing a bag of Affy SNP 500K arrays and would like to
know which package can be used to read in the raw .CEL files
and get the intensity values. In other words, I am looking for
the function like:

library(affy)
mydata <- ReadAffy()
eset_rma <- rma(mydata)

provided by affy package to analyze affy gene expression data.

Thank you very much!

Sincerely,
       Allen



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