[BioC] Error in loading package preprocessCore

[Weiwei Shi]

Thanks. I thot I missed xcode... you know, when your computer crashed,
you probably forgot which was lost...

I have leopard at hand but I will install it when R has stable version
for that, :)



On 11/13/07, Kasper Daniel Hansen <khansen at stat.berkeley.edu> wrote:
> You need to install gfortran. When you install R from the CRAN binary
> there is a button marked "customize". You will need to click that and
> choose gfortran.
>
> If you are running Leopard (which you might be, given that it is a
> new machine), there might be other issues, see r-sig-mac.
>
> Kasper
>
> On Nov 14, 2007, at 12:29 AM, Weiwei Shi wrote:
>
> > hi, there:
> >
> > recently my laptop was burned so I bot a new one; when I tried to use
> > affy package, I met the following problem:
> >
> >
> >> library(affy)
> > Loading required package: preprocessCore
> > Error in dyn.load(file, ...) :
> >   unable to load shared library
> > '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/
> > preprocessCore/libs/i386/preprocessCore.so':
> >   dlopen(/Library/Frameworks/R.framework/Versions/2.6/Resources/
> > library/preprocessCore/libs/i386/preprocessCore.so,
> > 5): Library not loaded: /usr/local/lib/libgfortran.2.dylib
> >   Referenced from:
> > /Library/Frameworks/R.framework/Versions/2.6/Resources/library/
> > preprocessCore/libs/i386/preprocessCore.so
> >   Reason: image not found
> > Error: package 'preprocessCore' could not be loaded
> >
> >> version
> >                _
> > platform       i386-apple-darwin8.10.1
> > arch           i386
> > os             darwin8.10.1
> > system         i386, darwin8.10.1
> > status         Patched
> > major          2
> > minor          6.0
> > year           2007
> > month          11
> > day            09
> > svn rev        43408
> > language       R
> > version.string R version 2.6.0 Patched (2007-11-09 r43408)
> >
> >> sessionInfo()
> > R version 2.6.0 Patched (2007-11-09 r43408)
> > i386-apple-darwin8.10.1
> >
> > locale:
> > en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >
> > attached base packages:
> > [1] tools     stats     graphics  grDevices utils     datasets
> > methods   base
> >
> > other attached packages:
> > [1] affyio_1.5.11  Biobase_1.16.1
> >
> >
> > --
> > Weiwei Shi, Ph.D
> > Research Scientist
> > GeneGO, Inc.
> >
> > "Did you always know?"
> > "No, I did not. But I believed..."
> > ---Matrix III
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives: http://news.gmane.org/
> > gmane.science.biology.informatics.conductor
>
>


-- 
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III