[BioC] Affy 10K SNP arrays

[James W. MacDonald]

Hi Aparna,

You want to use the oligo package.

Best,

Jim



Aparna Radhakrishnan wrote:
> I am pretty new to using the R and Bioconductor package for microarray
> analysis. I have managed to use R for affy-expression analysis. I would
> like to know how or which package I could use for SNP or copy number
> analysis. The dataset I have to analyse is an Affy 10K Geno-chip array.
> 
> Regards,
> Aparna.
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623