[BioC] Limma: Nimblegen array data import?
Dave Berger
dave.berger at up.ac.za
Thu Nov 29 04:52:21 CET 2007
previously, I have used limma for 2 colour array analysis.
I now have a new data set from Nimblegen arrays in which RMA
normalization has been completed and I wish to identify differentially
expressed genes from the allcalls.txt file which is a table of
expression values for all the treatments in one file
Question:
if I wish to do a single channel analysis in "limma", I would
appreciate suggestions on importing this data ie. how do I convert the
data to an "exprSet" object?
thanks
Dave Berger
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