[BioC] hyperGTest and HyperGParams

[James W. MacDonald]

You might try the topGO package.

Best,

Jim



João Fadista wrote:
> Dear all,
>  
> I would like to know if there is a way to use the hyperGTest function in the Category package if I don´t have an annotation package. I have the ensembl id´s of the genes in my microarray as well as all the GO terms associated with them.
>  
> If there is other tool that does the same job without the need of specifying the annotation package I will also be glad the hear about.
>  
>  
> Best regards,
> João Fadista
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
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