[BioC] MTP error

Boel Brynedal boel.brynedal at ki.se
Thu Nov 15 14:33:20 CET 2007


Dear List,

I am trying to use the MTP function in the multtest package. I get the
following error:

> mtp<-MTP(X=exprs(eS), Y=groupMO, test="t.twosamp.unequalvar",
robust=FALSE, typeone="fdr", method="sd.minP")
running bootstrap...
iteration = 100 200 300 400 500 600 700 800 900 1000

Error in pmin(na.rm, ...) : cannot mix 0-length vectors with others

Can anyone see what I am doing wrong? Any tips will be appreciated.

> sessionInfo()
R version 2.5.0 (2007-04-23)
x86_64-unknown-linux-gnu

attached base packages:
 [1] "grid"      "splines"   "tools"     "stats"     "graphics"
"grDevices"
 [7] "utils"     "datasets"  "methods"   "base"

other attached packages:
   multtest     annaffy        KEGG          GO  simpleaffy  genefilter
   "1.14.0"     "1.8.1"    "1.16.1"    "1.16.0"   "2.10.31"    "1.14.1"
   survival     IDPmisc     lattice     affyPLM       gcrma matchprobes
     "2.31"     "0.9.1"    "0.15-6"    "1.12.0"     "2.8.1"     "1.8.1"
   affydata        affy      affyio     Biobase
   "1.11.2"    "1.14.1"     "1.4.0"    "1.14.0"

Best regards,

Boel Brynedal, PhD student, Karolinska Institutet, Sweden



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