[BioC] Mapping Affy probes to OperonID or ensemblID
Julian Lee
julian at omniarray.com
Wed Nov 14 08:57:39 CET 2007
Hi all,
I'm relatively new to R/Bioconductor.
I'm trying to map Affy's HGU133plus2 probesids with OperonID/EnsemblIDs
Eg.
OperonIDs
H200007039
EnsemblIDs
ENSG00000169678
Desc
Linker for activation of T cells (36 kDa phospho-tyrosine adaptor protein) (pp36) (p36-38).
DB website link
http://omad.operon.com/human2/index.php
Is there an environment for OperonIDs in the hgu133plus2 package?
Eg.
library(hgu133plus2)
xx<-as.list(hgu133plus2OPERONID)
myU133plus2probes<-xx[match(operonidsofinterest,xx)]
If there isn't, could we build one?
Thank You
regards
Julian Lee
Bioinformatics Specialist
National Cancer Center SIngapore
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