[BioC] build of bioconductor on R 2.6.1 on mac os 10.5

[Furge, Kyle]

This may be an issue between a target specific (PPC 64) R binary installed on your machine and the universal binary packages hosted on CRAN/BioC.

Installing BioC using the 'type="source"' option (i.e. biocLite(type="source")) may help clear up the issue.

If this does work, also use the type="source" option for install.packages().

-kyle


On 11/28/07 1:59 AM, "Jason J. Evans" <jason.evans at marquette.edu> wrote:

I just built bioconductor with 'biocLite.R' and upgraded it on my
system running R 2.6.1 over Mac OS 10.5, Leopard, on 64-bit powerpc
based chips.  Upon trying to load Biobase it gives me an error
implying it was built for a different architecture or kernel as noted
below in its output.  Searching for this problem on the web,
bioconductor.org, or r-project.org turned up anything similar.  This
occurred with building a few python modules too, but they were
documented, though vaguely, on the web.  Has anyone else come up with
this problem or is it an isolated problem?

 > library(Biobase)
Error: package 'Biobase' was built for universal-apple-darwin8.10.1
 >

21-CC-/Users/bioaddix/Desktop/Biobase %  uname -a
Darwin CC.bioaddica 9.1.0 Darwin Kernel Version 9.1.0: Wed Oct 31
17:48:21 PDT 2007; root:xnu-1228.0.2~1/RELEASE_PPC Power Macintosh
22-CC-/Users/bioaddix/Desktop/Biobase %

24-CC-/Users/bioaddix/Desktop/Biobase %  gcc -v
Using built-in specs.
Target: powerpc-apple-darwin9
Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-
checking -enable-werror --prefix=/usr --mandir=/share/man --enable-
languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/
$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/
lib --build=i686-apple-darwin9 --program-prefix= --host=powerpc-apple-
darwin9 --target=powerpc-apple-darwin9
Thread model: posix
gcc version 4.0.1 (Apple Inc. build 5465)
25-CC-/Users/bioaddix/Desktop/Biobase %

any ideas are good ideas,


_jason
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