[BioC] build of bioconductor on R 2.6.1 on mac os 10.5

[Kasper Daniel Hansen]

Using source will fix the issue.

Having said that I am baffled at this because the builds are supposed  
to be universal binaries.... I have a friend who have the same  
problem on an Intel Macbook running Tiger when he uses pkgType =  
"mac.binary"

Kasper

On Nov 28, 2007, at 3:17 AM, Furge, Kyle wrote:

>
> This may be an issue between a target specific (PPC 64) R binary  
> installed on your machine and the universal binary packages hosted  
> on CRAN/BioC.
>
> Installing BioC using the 'type="source"' option (i.e. biocLite 
> (type="source")) may help clear up the issue.
>
> If this does work, also use the type="source" option for  
> install.packages().
>
> -kyle
>
>
> On 11/28/07 1:59 AM, "Jason J. Evans" <jason.evans at marquette.edu>  
> wrote:
>
> I just built bioconductor with 'biocLite.R' and upgraded it on my
> system running R 2.6.1 over Mac OS 10.5, Leopard, on 64-bit powerpc
> based chips.  Upon trying to load Biobase it gives me an error
> implying it was built for a different architecture or kernel as noted
> below in its output.  Searching for this problem on the web,
> bioconductor.org, or r-project.org turned up anything similar.  This
> occurred with building a few python modules too, but they were
> documented, though vaguely, on the web.  Has anyone else come up with
> this problem or is it an isolated problem?
>
>> library(Biobase)
> Error: package 'Biobase' was built for universal-apple-darwin8.10.1
>>
>
> 21-CC-/Users/bioaddix/Desktop/Biobase %  uname -a
> Darwin CC.bioaddica 9.1.0 Darwin Kernel Version 9.1.0: Wed Oct 31
> 17:48:21 PDT 2007; root:xnu-1228.0.2~1/RELEASE_PPC Power Macintosh
> 22-CC-/Users/bioaddix/Desktop/Biobase %
>
> 24-CC-/Users/bioaddix/Desktop/Biobase %  gcc -v
> Using built-in specs.
> Target: powerpc-apple-darwin9
> Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-
> checking -enable-werror --prefix=/usr --mandir=/share/man --enable-
> languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/
> $/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/
> lib --build=i686-apple-darwin9 --program-prefix= --host=powerpc-apple-
> darwin9 --target=powerpc-apple-darwin9
> Thread model: posix
> gcc version 4.0.1 (Apple Inc. build 5465)
> 25-CC-/Users/bioaddix/Desktop/Biobase %
>
> any ideas are good ideas,
>
>
> _jason
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>
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