[BioC] GOTERM
Mete Civelek
mete at seas.upenn.edu
Thu Nov 8 03:25:12 CET 2007
Hi All,
I have a simple problem that I can't seem to solve. I am using R 2.4.0 on
windows. I am trying to get the GO Terms of a list of GO IDs using the
following code. The list of GOIDs is in a file labelled SDGO.txt, which is
a single column text file with no header.
>library(GO)
>SDGO<-read.table("SDGO.txt", header=F)
>summary(SDGO)
V1
GO:0000075: 1
GO:0000375: 1
GO:0000377: 1
GO:0000398: 1
GO:0001503: 1
GO:0001505: 1
(Other) :134
>apply(SDGO, 1, GOTERM)
Error in get(x, envir, mode, inherits) : variable "GOTERM" of mode
"function" was not found
I am sure I am way off in this code since I am a beginner of R and
Bioconductor but I will appreciate any help?
Best,
Mete
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