[BioC] getting the pm and mm indices
Donna Toleno
toleno at usc.edu
Wed Nov 21 18:42:13 CET 2007
Hello Bioconductor list,
I am using the "hgu133plus2cdf" as my cdfpackagename
and I notice that I have a problem with the following commands when a probe name is nested within other probenames.
There is a probe named "1053_at" and "241053_at"
For example,
> a <- get("1053_at", env=get(cdfpackagename))
> a
pm mm
NA NA
> indexProbes(mydata, "pm")["1053_at"]
$`1053_at`
pm mm
NA NA
> indexProbes(mydata, "pm")["1007_s_at"]
$`1007_s_at`
[1] 369707 563318 1049349 238813 1140401 1130782 1144961 207148 1144717 285805 1351879 1170814 906807
[14] 547053 1221909 2761
is the getProbeDataAffy a potential solution?
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