[BioC] Analysis of Illumina methylation array data using beadarray

[Kellie J Archer/FS/VCU]

   Mark,
   We are also shipping samples to process using the Illumina Methylation
   beadarray and I was under the impression that the facility would be able to
   provide the raw bead level data as well as the summaries. Based on your
   response, perhaps I need to clarify this with them. Can you provide the
   explicit instructions for modifying the settings.xml file prior to scanning
   so that bead level data is available? Thanks!
   Best,
   Kellie

   Kellie J. Archer, Ph.D.
   Assistant Professor
   Department of Biostatistics & Massey Cancer Center
   Virginia Commonwealth University
   730 East Broad St., 3-022
   Richmond, VA 23298-0032
   phone: (804) 827-2039
   fax: (804) 828-8900
   e-mail: [1]kjarcher at vcu.edu
   website: [2]www.people.vcu.edu/~kjarcher

References

   1. mailto:kjarcher at vcu.edu
   2. http://www.people.vcu.edu/%7Ekjarcher