[BioC] failure in GDS2eSet() in package GEOquery

Saroj Mohapatra smohapat at vbi.vt.edu
Tue Nov 6 18:14:17 CET 2007


Hello Ben:

>gds <- getGEO('GSE2034')
>eset <- GDS2eSet(gds)
>
>I get the following error message after the call to GDS2eSet():
>
>Error in function (classes, fdef, mtable)  :
>  unable to find an inherited method for function "Table", for signature "GSE"
>
>  
>
Perhaps because 'gds' is not a GDS datastructure (but a GSE 
datastructure) in this case.

 From the help page:
-----
GDS2eSet(GDS,do.log2=FALSE,GPL=NULL)
Arguments
GDS The GDS datastructure returned by getGEO
------

Best,

Saroj

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>  
>



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