[BioC] Limma - Gene set test

[Mark Robinson]

Yes, limma does.

?geneSetTest tells you about it.

Written by Dr Smyth, not Dr Smith.


M.


On 30/11/2007, at 12:11 PM, Srinivas Iyyer wrote:

> Dear Group,
>
>
> does limma provide gene set enrichment through a
> wilcoxon rank sum test?
>
> I overheard someone discussing that enrichment scores
> provided through this method (limma - wilcoxon rank
> sum) are better than GSEA enrichment scores.
>
> I see some old 2005 tutorials usings Dr. Smiths gene
> set test.
>
> I am finding difficult to find any vignette that
> discuss Gene set test and wilcoxon rank sum.
> Are there any new changes to  limma towards advanced
> gene set test version.
>
> Please suggest.
> thanks
> srini
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/ 
> gmane.science.biology.informatics.conductor