[BioC] tpmap2bpmap in affxparser
Kasper Daniel Hansen
khansen at stat.Berkeley.EDU
Tue Nov 6 07:26:54 CET 2007
This is a bug (which I seem to recall having seen before, so I don't
know why it is still there, perhaps it was in another function). I
have fixed it in the devel version.
If you just want a quick fix you can call the function as
tpmap2bpmap(tpmapname='x', bpmapname='y', verbose = as.integer(0))
On Nov 6, 2007, at 1:59 AM, Daniel Zak wrote:
> Has anyone successfully used "tpmap2bpmap" in affxparser to create
> a BPMAP from a TPMAP file?
> I successfully used the affxparser package to read in my BPMAP
> and to write it out as a TPMAP. When I try to write the TPMAP out
> back to a BPMAP, i get an error. The error is very upstream in
> the code, as it doesnt matter whether the files I specify in the
> command even exist.
> Here is my error:
>> tpmap2bpmap(tpmapname='x', bpmapname='y');
> Error in tpmap2bpmap(tpmapname = "x", bpmapname = "y") :
> INTEGER() can only be applied to a 'integer', not a 'double'
> I'm using affxparser on a Windows machine under R2.5.
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