[BioC] Using another array system but affy

[Wolfgang Huber]

Dear Erika,

> I'm a newbie to bioconductor, but I've already done some analysis an affy
> arrays. However, I've got some data obtained in the codelink system that I'd
> like to analyze in bioconductor as well. What packages should I use? Can
> affy packages be used for these data?

Please have a look at the limma package.

You might also try to formulate your question more precisely. "analyse" 
is a fairly unspecific task description, almost all of the packages on 
Bioconductor can be used for some kind of analysis or other.

Best wishes
   Wolfgang

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Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber