[BioC] custom affylmGUI menus

Stefanie De Bodt stefanie.debodt at psb.ugent.be
Wed Nov 28 12:03:51 CET 2007

I would like to use vsn normalization through the affylmGUI package. Is 
this possible by customizing the menu?
I followed the guidelines in the documentation of the affylmGUI package. 
I have changed the affylmGUI-menus.txt file in the etc folder.

item    normalizeMenu   command    "vsn"   vsn

I have also copied the vsn.R source file to the etc folder. Is this 
necessary or should more source files/the complete package be copied to 
that folder?

I get the following error:

Error in eval(expr,envir,enclos): object "vsn" not found

Thanks for any suggestions,

Stefanie De Bodt, PhD       

VIB Department of Plant Systems Biology, UGent
Bioinformatics and Evolutionary Genomics
Technologiepark 927
B-9052 Gent
Tel: 32 (0)9 3313692
Website: http://bioinformatics.psb.ugent.be

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