July 2007 Archives by thread

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Starting: Sun Jul 1 08:58:23 CEST 2007
Ending: Tue Jul 31 20:58:56 CEST 2007
Messages: 451

• [BioC] hyperGTest(GOstats) result question   burak kutlu
  • [BioC] hyperGTest(GOstats) result question   Seth Falcon
• [BioC] ReadAffy() Problem   ssls sddd
  • [BioC] ReadAffy() Problem   smohapat at vbi.vt.edu
• [BioC] about two way anova on time and treatment   Ana Conesa
  • [BioC] about two way anova on time and treatment   James Anderson
    • [BioC] normalizeBetweenArrays   Lev Soinov
• [BioC] goTools: ontoCompare question   davidl at unr.nevada.edu
• [BioC] Questions about Simpleaffy Session in R & BioConductor Manual   ssls sddd
• [BioC] CGH analysis warning messages   Daniel Brewer
  • [BioC] CGH analysis warning messages   Ian Roberts
• [BioC] Biomart with human genes NCBI 35   marco zucchelli
  • [BioC] Biomart with human genes NCBI 35   Durinck, Steffen (NIH/NCI) [F]
• [BioC] hgu133a and gnGNF1Ba   Robert Castelo
  • [BioC] hgu133a and gnGNF1Ba   Cei Abreu-Goodger
• [BioC] Combining arrays arrays from different tissues and different labs.   marco zucchelli
• [BioC] These are some of the things to love about Caesars Palace Las Vegas, and there are plenty more.   Carrie Slaughter
• [BioC] limma normalizeWithinArrays method="control"   Al Ivens
• [BioC] What is the best way to eliminate non-variants from set of arrays?   Ruppert Valentino
• [BioC] entry-level   Floy
• [BioC] SAM algorithm S0 value calculation   jaydeep chovatia
  • [BioC] SAM algorithm S0 value calculation   James W. MacDonald
• [BioC] GSEA, HyperGeo vs gene-centric analysis   arne.mueller at novartis.com
  • [BioC] GSEA, HyperGeo vs gene-centric analysis   Weiwei Shi
• [BioC] BSgenome and R memory use   Paul Leo
  • [BioC] BSgenome and R memory use   Martin Morgan
    • [BioC] BSgenome and R memory use   Paul Leo
    • [BioC] BSgenome and R memory use   Herve Pages
• [BioC] Asbjorn Lonvig has been a Premiere Portfolio artist at absolutearts.   Sanders X. Robin
• [BioC] SAM algorithm S0 value calculation   Stephen Henderson
• [BioC] what test?   simonegri at alice.it
• [BioC] oligo package for R-2.4.1   Tae-Hoon Chung
  • [BioC] oligo package for R-2.4.1   Benilton Carvalho
    • [BioC] oligo package for R-2.4.1   Kasper Daniel Hansen
• [BioC] GEOquery on rawdata and processed data ?   Alex Tsoi
  • [BioC] GEOquery on rawdata and processed data ?   Alex Tsoi
    • [BioC] GEOquery on rawdata and processed data ?   Saroj Mohapatra
      • [BioC] GEOquery on rawdata and processed data ?   Jenny Drnevich
  • [BioC] GEOquery on rawdata and processed data ?   Sean Davis
    • [BioC] GEOquery on rawdata and processed data ?   Alex Tsoi
      • [BioC] GEOquery on rawdata and processed data ?   Sean Davis
• [BioC] Problem with tkWidgets with 2.5.0 on Mac OS Tiger   John Cornell
  • [BioC] Problem with tkWidgets with 2.5.0 on Mac OS Tiger   Robert Gentleman
  • [BioC] Problem with tkWidgets with 2.5.0 on Mac OS Tiger   Martin Morgan
• [BioC] marray layout   Vanessa Vermeirssen
  • [BioC] marray layout   Jean Yee Hwa Yang
• [BioC] combineAffyBatch   Kauer Maximilian Otto
  • [BioC] combineAffyBatch   Martin Morgan
• [BioC] Regressions in multtest   Benjamin Otto
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
  • [BioC] Problem creating a contrast matrix   Jim MacDonald
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
  • [BioC] Problem creating a contrast matrix   Artur Veloso
• [BioC] Problem creating a contrast matrix   Siarhei Manakou
• [BioC] aCGH package analysis - duplicate spot averaging problem   Ian Roberts
• [BioC] problems reading Illumina files using BeadExplorer   Keon Myung Lee
• [BioC] journal.yoaqcq.pdf   Austin Dora
• [BioC] nsFilter error   Thomas Lo
  • [BioC] nsFilter error   Seth Falcon
    • [BioC] nsFilter error   Thomas Lo
      • [BioC] nsFilter error   Martin Morgan
      • [BioC] nsFilter error   Thomas Lo
• [BioC] exonmap/xmap database install problem   Johannes Rainer
  • [BioC] exonmap/xmap database install problem   Crispin Miller
    • [BioC] exonmap/xmap database install problem   Johannes Rainer
  • [BioC] exonmap/xmap database install problem   Sean Davis
    • [BioC] exonmap/xmap database install problem   Benoit Ballester
• [BioC] Converting Seglist to segments file   Daniel Brewer
• [BioC] gcrma error? - linked to makeProbePackage ?   Benoit Ballester
  • [BioC] gcrma error? - linked to makeProbePackage ?   James W. MacDonald
    • [BioC] gcrma error? - linked to makeProbePackage ?   Benoit Ballester
      • [BioC] gcrma error? - linked to makeProbePackage ?   Kasper Daniel Hansen
    • [BioC] gcrma error? - linked to makeProbePackage ?   Benoit Ballester
      • [BioC] gcrma error? - linked to makeProbePackage ?   Cei Abreu-Goodger
      • [BioC] gcrma error? - linked to makeProbePackage ?   Benoit Ballester
      • [BioC] gcrma error? - linked to makeProbePackage ?   Cei Abreu-Goodger
      • [BioC] gcrma error? - linked to makeProbePackage ?   Benoit Ballester
      • [BioC] gcrma error? - linked to makeProbePackage ?   James W. MacDonald
• [BioC] Manufacturer ids in lumiHumanV1   Benjamin Otto
  • [BioC] Manufacturer ids in lumiHumanV1   Sean Davis
• [BioC] how to see the content of a bioconductor function?   carol white
  • [BioC] how to see the content of a bioconductor function?   Benjamin Otto
    • [BioC] how to see the content of a bioconductor function?   James W. MacDonald
• [BioC] AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM   Chuen Seng, Tan
  • [BioC] AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM   Nianhua Li
• [BioC] Nimblegen analysis using Bioconductor   Rene Dreos (JIC)
  • [BioC] Nimblegen analysis using Bioconductor   Joern Toedling
  • [BioC] Nimblegen analysis using Bioconductor   J.delasHeras at ed.ac.uk
• [BioC] Comparison of your beadarray package with Illumina's analysis software   Mark Dunning
• [BioC] k-fold cross validation with xval   carol white
• [BioC] Bioconductor Chicago 2007   Denise Scholtens
  • [BioC] Affystart function in Affycoretools   Sachin Mathur
    • [BioC] Affystart function in Affycoretools   James W. MacDonald
      • [BioC] Affystart function in Affycoretools   Sachin Mathur
      • [BioC] Affystart function in Affycoretools   James W. MacDonald
• [BioC] How to combine Affymetrix and Illumina Arrays   ssls sddd
• [BioC] ROC   yoo hoo
• [BioC] How to combine Affymetrix and Illumina Arrays   Matthias Kohl
• [BioC] Announcement-VPCZOALHTGRBY.pdf   shed
• [BioC] Pvalue permutation of Linear regression   Benjamin Otto
• [BioC] Manufacturer ids in lumiHumanV1   Pan Du
  • [BioC] technical vs biological replication in real-time   r.athanasiadou
    • [BioC] technical vs biological replication in real-time   Juan Pedro Steibel
      • [BioC] technical vs biological replication in real-time   Juan Pedro Steibel
• [BioC] Problem with ArrayQuality Package version 1.12   Peter White
  • [BioC] Problem with ArrayQuality Package version 1.12   Paquet, Agnes
    • [BioC] Problem with ArrayQuality Package version 1.12   Peter White
      • [BioC] Problem with ArrayQuality Package version 1.12   Paquet, Agnes
      • [BioC] Problem with ArrayQuality Package version 1.12   Peter White
      • [BioC] Problem with ArrayQuality Package version 1.12   Martin Morgan
      • [BioC] Problem with ArrayQuality Package version 1.12   Peter White
      • [BioC] Problem with ArrayQuality Package version 1.12   Martin Morgan
      • [BioC] Problem with ArrayQuality Package version 1.12   Martin Morgan
      • [BioC] Problem with ArrayQuality Package version 1.12   Paquet, Agnes
• [BioC] AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM   Marc Carlson
• [BioC] Tools for Combining Affy and aCGH data   Tarun Nayar
  • [BioC] Tools for Combining Affy and aCGH data   Sean Davis
    • [BioC] Tools for Combining Affy and aCGH data   Pierre Neuvial
    • [BioC] Tools for Combining Affy and aCGH data   Benjamin Otto
      • [BioC] Tools for Combining Affy and aCGH data   Vincent Carey 525-2265
• [BioC] AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM   Marc Carlson
• [BioC] how to get gene information?   Roger Liu
  • [BioC] how to get gene information?   Sean Davis
    • [BioC] how to get gene information?   Roger Liu
• [BioC] how to revert to an older limma version?   Maya Bercovich
  • [BioC] how to revert to an older limma version?   Kasper Daniel Hansen
    • [BioC] how to revert to an older limma version?   Marcus Davy
• [BioC] Identification of unannotated transcripts using Arabidopsis 1.0R Tiling Arrays   Pia Sappl
  • [BioC] Identification of unannotated transcripts using Arabidopsis 1.0R Tiling Arrays   Sean Davis
    • [BioC] Identification of unannotated transcripts using Arabidopsis 1.0R Tiling Arrays   Wolfgang Huber
• [BioC] Questions regarding lumi   Ingrid H. G. Østensen
• [BioC] how to revert to an older limma version?   Maya Bercovich
  • [BioC] how to revert to an older limma version?   Seth Falcon
• [BioC] Sequence output formatting   Daniel Brewer
  • [BioC] Sequence output formatting   J.delasHeras at ed.ac.uk
    • [BioC] Sequence output formatting   Richard Pearson
  • [BioC] Sequence output formatting   Tobias Straub
    • [BioC] Sequence output formatting   Tobias Straub
• [BioC] similar limma's contrast.fit function for lme (mixed effect model) object   shirley zhang
• [BioC] Problems with MANOR and RSPerl   James Morris
  • [BioC] Problems with MANOR and RSPerl   Seth Falcon
• [BioC] Questions regarding lumi   Pan Du
  • [BioC] Questions regarding lumi   Ingrid H. G. Østensen
• [BioC] Expected score values in SAM algorithm   jaydeep chovatia
• [BioC] RMAGEML and JVM   Michaela Gündel
  • [BioC] RMAGEML and JVM   Wolfgang Huber
    • [BioC] RMAGEML and JVM   Michaela Gündel
  • [BioC] RMAGEML and JVM   Martin Morgan
    • [BioC] RMAGEML and JVM   Michaela Gündel
      • [BioC] RMAGEML and JVM   Martin Morgan
• [BioC] how to revert to an older limma version?   Maya Bercovich
  • [BioC] how to revert to an older limma version?   Martin Morgan
• [BioC] RMAGEML and JVM   Wolfgang Huber
  • [BioC] RMAGEML and JVM   Michaela Gündel
• [BioC] Biostatistician/Statistical Programmer/Data Analyst   Holden-Wiltse, Jeanne
• [BioC] Peculiar behaviour of normalize.quantiles (in affy, preprocessCore) if there are NA data   Wolfgang Huber
  • [BioC] Peculiar behaviour of normalize.quantiles (in affy, preprocessCore) if there are NA data   Ben Bolstad
• [BioC] Using current GO data with Bioconductor   Peter Robinson
  • [BioC] Using current GO data with Bioconductor   Marc Carlson
• [BioC] Bioconductor training at BioC2007   Seth Falcon
• [BioC] Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X   Michael Parisi
  • [BioC] Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X   Seth Falcon
  • [BioC] Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X   Alex
• [BioC] hyperGTest(GOstats) result question   burak kutlu
  • [BioC] hyperGTest(GOstats) result question   Seth Falcon
• [BioC] displaying heatmap with gene names instead of Affy probes   Ruppert Valentino
  • [BioC] displaying heatmap with gene names instead of Affy probes   Sean Davis
• [BioC] Nimblegen chip analysis   Rene Dreos (JIC)
  • [BioC] Nimblegen chip analysis   Benilton Carvalho
  • [BioC] Nimblegen chip analysis   Todd Richmond
• [BioC] lumiT VST error   William Mifsud
• [BioC] Annalyzing replicates in the Agilent chip 4 x44 with limma   Ester Feldmesser
  • [BioC] Annalyzing replicates in the Agilent chip 4 x44 with limma   Francois Pepin
• [BioC] how to revert to an older limma version?   Martin Morgan
• [BioC] displayTIFFImage funtion in beadarray package   Sebastien Gerega
  • [BioC] displayTIFFImage funtion in beadarray package   Jarno Tuimala
  • [BioC] displayTIFFImage funtion in beadarray package   Matt Ritchie
    • [BioC] displayTIFFImage funtion in beadarray package   Sebastien Gerega
      • [BioC] displayTIFFImage funtion in beadarray package   Matt Ritchie
• [BioC] Outputting dendrogram with large numbers of genes without losing resolution   Marie Chehani Alles
  • [BioC] Outputting dendrogram with large numbers of genes without losing resolution   Sean Davis
    • [BioC] Outputting dendrogram with large numbers of genes without losing resolution   Thomas Girke
• [BioC] how to revert to an older limma version?   Maya Bercovich
  • [BioC] how to revert to an older limma version?   Martin Morgan
• [BioC] lumiT VST error   Pan Du
  • [BioC] lumiT VST error   William Mifsud
    • [BioC] lumiT VST error   Pan Du
      • [BioC] Source codes of affy, gcrma and quantiles   Gunther Höning
      • [BioC] Source codes of affy, gcrma and quantiles   Wolfgang Huber
      • [BioC] lumiT VST error   William Mifsud
• [BioC] filtering   Lev Soinov
  • [BioC] filtering   Jenny Drnevich
    • [BioC] filtering   Lev Soinov
    • [BioC] filtering   Lev Soinov
      • [BioC] filtering   J.delasHeras at ed.ac.uk
      • [BioC] filtering   Lev Soinov
      • [BioC] filtering   J.delasHeras at ed.ac.uk
  • [BioC] filtering   J.delasHeras at ed.ac.uk
    • [BioC] filtering   Lev Soinov
      • [BioC] filtering   J.delasHeras at ed.ac.uk
      • [BioC] filtering   Lev Soinov
      • [BioC] filtering   J.delasHeras at ed.ac.uk
      • [BioC] filtering   Lev Soinov
      • [BioC] filtering   J.delasHeras at ed.ac.uk
      • [BioC] filtering   Lev Soinov
• [BioC] Limma, SAM and Fold Change Calculation   Peter White
• [BioC] Return of "I'm sorry, I do not know about chip type (foo)"   Dave Jacoby
• [BioC] Sample size calculation - microarray experiemnt   Sharon
  • [BioC] Sample size calculation - microarray experiemnt   Claus-Dieter Mayer
• [BioC] bioinformatics position at Harvard Medical School   Wall, Dennis Paul
• [BioC] clumsy coercive   Emm Velazquez
• [BioC] Annalyzing replicates in the Agilent chip 4 x44 with limma   Gordon Smyth
• [BioC] JOB: 5-year research positions in Bioinformatics/Biomathematics. Faculty of Sciences of the University of Porto   Joaquim Fernando Pinto da Costa
• [BioC] Outputting dendrogram with large numbers of genes, without losing resolution   Aedin Culhane
• [BioC] peddle   Jack Whaley
• [BioC] Limma, SAM and Fold Change Calculation   Gordon K Smyth
  • [BioC] Limma, SAM and Fold Change Calculation   Holger Schwender
    • [BioC] Limma, SAM and Fold Change Calculation   Peter White
      • [BioC] Limma, SAM and Fold Change Calculation   Gordon Smyth
    • [BioC] Limma, SAM and Fold Change Calculation   Gordon Smyth
  • [BioC] Limma, SAM and Fold Change Calculation   Holger Schwender
• [BioC] LIMMA: statistical/methodical question   Mayra Eduardoff
• [BioC] LIMMA   Lev Soinov
  • [BioC] LIMMA   Gordon Smyth
• [BioC] LIMMA   Lev Soinov
• [BioC] filtering   drnevich at uiuc.edu
  • [BioC] filtering   Lev Soinov
• [BioC] What if your service layer is written with Spring and Hibernate?   Theodore
• [BioC] The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.   Neddy
• [BioC] hyperGTest - GO node universe?   Edward Bolanger
  • [BioC] hyperGTest - GO node universe?   Seth Falcon
• [BioC] R/limma Help   Alessandro Fazio
• [BioC] affyPLM - cant plot chip pseudo image   Rebecca
  • [BioC] affyPLM - cant plot chip pseudo image   James W. MacDonald
    • [BioC] affyPLM - cant plot chip pseudo image   Rebecca
• [BioC] affyPLM - cant plot chip pseudo image   James W. MacDonald
  • [BioC] affyPLM - cant plot chip pseudo image   Rebecca
• [BioC] How to use KEGG in Bioconductor   mousheng xu
• [BioC] How to use KEGG in Bioconductor   John Zhang
• [BioC] Duplicate Correlation through Blocks   Scott Reagan Franklin
• [BioC] Duplicate Correlation through Blocks   Franklin, Scott
  • [BioC] Duplicate Correlation through Blocks   Francois Pepin
• [BioC] how to use limma on this format   Weiwei Shi
  • [BioC] how to use limma on this format   smohapat at vbi.vt.edu
    • [BioC] how to use limma on this format   Weiwei Shi
      • [BioC] how to use limma on this format   Sean Davis
      • [BioC] how to use limma on this format   Weiwei Shi
      • [BioC] how to use limma on this format   J.delasHeras at ed.ac.uk
      • [BioC] how to use limma on this format   Weiwei Shi
      • [BioC] how to use limma on this format   Sean Davis
• [BioC] Imputation problem in aCGH   Benjamin Otto
  • [BioC] ADD: Imputation problem in aCGH   Benjamin Otto
• [BioC] Removing libraries or using a particular function   Daniel Brewer
  • [BioC] Removing libraries or using a particular function   Mark Robinson
    • [BioC] Removing libraries or using a particular function   Wolfgang Huber
      • [BioC] Removing libraries or using a particular function   Seth Falcon
  • [BioC] Removing libraries or using a particular function   Jarno Tuimala
• [BioC] MAANOVA help   Alessandro Fazio
• [BioC] Nimblegen analysis using oligo   Rene Dreos (JIC)
• [BioC] biomaRt get exon intron structure of a transcrit   Johannes Rainer
• [BioC] affyPLM - cant plot chip pseudo image   James W. MacDonald
• [BioC] Transcription factor genes   Tae-Hoon Chung
  • [BioC] Transcription factor genes   Marc Carlson
• [BioC] annotation files for agilent: a bit off-topic   Weiwei Shi
  • [BioC] annotation files for agilent: a bit off-topic   Sean Davis
    • [BioC] annotation files for agilent: a bit off-topic   Weiwei Shi
      • [BioC] annotation files for agilent: a bit off-topic   Francois Pepin
      • [BioC] annotation files for agilent: a bit off-topic   Weiwei Shi
      • [BioC] annotation files for agilent: a bit off-topic   Francois Pepin
• [BioC] Biostatistician Position: UMass Medical School   Lapointe, David
• [BioC] Help in biomaRt   Alex Tsoi
  • [BioC] Help in biomaRt   Hooiveld, Guido
  • [BioC] Help in biomaRt   Wolfgang Huber
• [BioC] Tr: RE : Help in biomaRt   el mousselly antra
• [BioC] GOHyperG stats question   Suraj Menon
  • [BioC] GOHyperG stats question   James W. MacDonald
• [BioC] question on limma package   el mousselly antra
  • [BioC] question on limma package   Richard Friedman
    • [BioC] question on limma package   J.delasHeras at ed.ac.uk
    • [BioC] question on limma package/PCR validation   Claus-Dieter Mayer
• [BioC] annotation files for agilent: a bit off-topic   John Zhang
  • [BioC] annotation files for agilent: a bit off-topic   Gaj Stan (BIGCAT)
    • [BioC] annotation files for agilent: a bit off-topic   Weiwei Shi
• [BioC] RE : Re: question on limma package   Richard Friedman
• [BioC] Agilent annotation package   Yad Ghavi-Helm
• [BioC] Transcription factor genes   Khan, Anar
• [BioC] question about RMA's background adjustment...   Jenny Drnevich
• [BioC] analysis of HG_U95A vs. HG_U95Av2   Alex Tsoi
  • [BioC] analysis of HG_U95A vs. HG_U95Av2   Marc Carlson
  • [BioC] analysis of HG_U95A vs. HG_U95Av2   Ben Bolstad
• [BioC] sam and the new version   el mousselly antra
  • [BioC] sam and the new version   J.delasHeras at ed.ac.uk
  • [BioC] sam and the new version   Holger Schwender
    • [BioC] RE : Re: sam and the new version   el mousselly antra
    • [BioC] RE : Re: sam and the new version   el mousselly antra
      • [BioC] RE : Re: sam and the new version   Holger Schwender
      • [BioC] RE : Re: RE : Re: siggesn and ebam   el mousselly antra
      • [BioC] RE : Re: RE : Re: siggesn and ebam   Holger Schwender
      • [BioC] RE : missing dat in siggenes   el mousselly antra
• [BioC] RE : Re: question on limma package   William Mifsud
  • [BioC] RE : Re: question on limma package   Jenny Drnevich
• [BioC] GOHyperG stats question   Suraj Menon
• [BioC] analysis of HG_U95A vs. HG_U95Av2   Rob Scharpf
• [BioC] limma and cybert T difference on variance   el mousselly antra
• [BioC] Error with arrayQuality   Shripad Sinari
  • [BioC] Error with arrayQuality   Paquet, Agnes
  • [BioC] Error with arrayQuality   Seth Falcon
• [BioC] network (interaction) data repositories for bioc?   Paul Shannon
  • [BioC] network (interaction) data repositories for bioc?   Wolfgang Huber
• [BioC] go count   ariel at df.uba.ar
  • [BioC] go count   Seth Falcon
• [BioC] GO terms not found in goTools and GO   Lina Hultin-Rosenberg
  • [BioC] GO terms not found in goTools and GO   Wolfgang Huber
    • [BioC] GO terms not found in goTools and GO   Seth Falcon
      • [BioC] GO terms not found in goTools and GO   Lina Hultin-Rosenberg
• [BioC] SScore Compatibility Problems?   Chris Parkin
  • [BioC] SScore Compatibility Problems?   Wolfgang Huber
    • [BioC] SScore Compatibility Problems?   Richard Kennedy
      • [BioC] SScore Compatibility Problems?   Kasper Daniel Hansen
      • [BioC] SScore Compatibility Problems?   Chris Parkin
• [BioC] LumiBatch Object - Help   Sharon
• [BioC] OT: random priming labelling - label nucleotide or primer?   J.delasHeras at ed.ac.uk
• [BioC] Input for KS test   Ken Termiso
• [BioC] how to make probe environments for use with GCRMA   Wittner, Ben, Ph.D.
  • [BioC] how to make probe environments for use with GCRMA   Kasper Daniel Hansen
• [BioC] BIRD 2008 call for workshop proposal   Prof. Roland Wagner
• [BioC] Getting GO term from GOids   Alex Tsoi
  • [BioC] Getting GO term from GOids   Seth Falcon
    • [BioC] Getting GO term from GOids   Alex Tsoi
      • [BioC] Getting GO term from GOids   James W. MacDonald
• [BioC] how to revert to an older limma version?   Maya Bercovich
• [BioC] how to make probe environments for use with GCRMA   claire
• [BioC] Limma and randomized block design for time-course microarray experiment   Serge Eifes
• [BioC] fitPLM query   dhruv pant
  • [BioC] fitPLM query   Ben Bolstad
• [BioC] limma contrast matrix   Florence Combes
  • [BioC] limma contrast matrix   Florence Combes
• [BioC] retrieving specific FDR value from SAM   Alex Tsoi
  • [BioC] retrieving specific FDR value from SAM   Holger Schwender
• [BioC] extraction of detectable genes in illumina data.   Zara Ghazoui
• [BioC] generic quality control   Weiwei Shi
• [BioC] how to store multiple relationships between nodes in graphNEL?   Paul Shannon
  • [BioC] how to store multiple relationships between nodes in graphNEL?   Seth Falcon
    • [BioC] how to store multiple relationships between nodes in graphNEL?   Paul Shannon
      • [BioC] how to store multiple relationships between nodes in graphNEL?   Seth Falcon
      • [BioC] how to store multiple relationships between nodes in graphNEL?   Paul Shannon
      • [BioC] how to store multiple relationships between nodes in graphNEL?   Seth Falcon
• [BioC] LumiBatch Object - Help   Michal Blazejczyk
• [BioC] How to make a list as below   Li, Aiguo (NIH/NCI) [C]
  • [BioC] How to make a list as below   Benilton Carvalho
  • [BioC] How to make a list as below   Weiwei Shi
• [BioC] LAD (Logical analysis of data) algorithm package?   Weiyin Zhou
• [BioC] Rgraphviz - how to use node positions from one graph as node positions in another?   Søren Højsgaard
  • [BioC] Rgraphviz - how to use node positions from one graph as node positions in another?   Kasper Daniel Hansen
  • [BioC] Rgraphviz - how to use node positions from one graph as node positions in another?   Li.Long at isb-sib.ch
• [BioC] Limma and randomized block design for time-course microarray experiment   Gordon Smyth
• [BioC] Problems with gcrma using latest version of R and Bioconductor   Sebastian Bauer
  • [BioC] Problems with gcrma using latest version of R and Bioconductor   James W. MacDonald
    • [BioC] Problems with gcrma using latest version of R and Bioconductor   Sebastian Bauer
      • [BioC] Problems with gcrma using latest version of R and Bioconductor   James MacDonald
      • [BioC] Problems with gcrma using latest version of R and Bioconductor   Seth Falcon
      • [BioC] Problems with gcrma using latest version of R and Bioconductor   Sebastian Bauer
      • [BioC] Problems with gcrma using latest version of R and Bioconductor   Francois Pepin
• [BioC] problem with fetching gene information in biomaRt for mouse_430_2   Edmund Chang
  • [BioC] problem with fetching gene information in biomaRt for mouse_430_2   Cei Abreu-Goodger
• [BioC] Color Question about image function in graphics package   swang
  • [BioC] Color Question about image function in graphics package   Joern Toedling
• [BioC] read.phenoData vs read.AnnotatedDataFrame   Johnstone, Alice
  • [BioC] read.phenoData vs read.AnnotatedDataFrame   Martin Morgan
  • [BioC] read.phenoData vs read.AnnotatedDataFrame   Herve Pages
• [BioC] beadarray package: problem with bead level data   Krys Kelly
  • [BioC] beadarray package: problem with bead level data   J.delasHeras at ed.ac.uk
  • [BioC] beadarray package: problem with bead level data   Matt Ritchie
  • [BioC] beadarray package: problem with bead level data   Mike Smith
• [BioC] Bug in probeNames()   Groot, Philip de
  • [BioC] Bug in probeNames()   lgautier at altern.org
    • [BioC] Bug in probeNames()   Wolfgang Huber
• [BioC] random permutation for one-sample high dimensional data set   carol white
• [BioC] read.phenoData vs read.AnnotatedDataFrame   Johnstone, Alice
• [BioC] Post-doctoral position in statistical genomics at the Research Institute of the Hospital for Sick Children - Toronto, Canada   Joseph Beyene
• [BioC] Finding GO leaf nodes for an ontology - which package?   Tim Smith
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Seth Falcon
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Herve Pages
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Seth Falcon
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Seth Falcon
    • [BioC] Finding GO leaf nodes for an ontology - which package?   Tim Smith
      • [BioC] Finding GO leaf nodes for an ontology - which package?   Seth Falcon
• [BioC] Finding GO leaf nodes for an ontology - which package?   John Zhang
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Tim Smith
• [BioC] beadarray package: problem with bead level data   Krys Kelly
• [BioC] Finding GO leaf nodes for an ontology - which package?   John Zhang
  • [BioC] Finding GO leaf nodes for an ontology - which package?   Robert Gentleman
• [BioC] affxparser: bug fix in Bioc 2.0   Kasper Daniel Hansen
• [BioC] Error in QAReport function of package affyQCReport   Mark W Kimpel
  • [BioC] Error in QAReport function of package affyQCReport   Robert Gentleman
    • [BioC] Compare GO lists   Ana Conesa
    • [BioC] Error in QAReport function of package affyQCReport   Mark W Kimpel
      • [BioC] Error in QAReport function of package affyQCReport   Robert Gentleman
      • [BioC] Error in QAReport function of package affyQCReport   Seth Falcon
    • [BioC] Error in QAReport function of package affyQCReport   Mark W Kimpel
      • [BioC] Error in QAReport function of package affyQCReport   Robert Gentleman
      • [BioC] Error in QAReport function of package affyQCReport   Mark W Kimpel
      • [BioC] Error in QAReport function of package affyQCReport   Robert Gentleman
• [BioC] comparing GO lists   Robert Gentleman
  • [BioC] comparing microarray gene signatures   Yi, Andrew
• [BioC] comparing GO lists   Ana Conesa
  • [BioC] comparing GO lists   Robert Gentleman
    • [BioC] comparing GO lists   Herve Pages
• [BioC] exprSet in alongChrom from geneplotter   Heidi Dvinge
  • [BioC] exprSet in alongChrom from geneplotter   Seth Falcon
• [BioC] One-Color Agilent miRNA microarrays   Francesco Favero
  • [BioC] One-Color Agilent miRNA microarrays   Pedro López-Romero
• [BioC] memory - global test   Simo.rossi
  • [BioC] memory - global test   Seth Falcon
• [BioC] globalTest - memory and input   Simo.rossi
• [BioC] One-Color Agilent miRNA microarrays   Francesco Favero
• [BioC] One-Color Agilent miRNA microarrays   Pedro López-Romero
  • [BioC] One-Color Agilent miRNA microarrays   Wolfgang Huber
• [BioC] One-Color Agilent miRNA microarrays   Francesco Favero
• [BioC] memory - global test   Simo.rossi
  • [BioC] memory - global test   Seth Falcon
• [BioC] Affymetrix annotation package   Hans-Ulrich Klein
  • [BioC] Affymetrix annotation package   James W. MacDonald
    • [BioC] Affymetrix annotation package   Lapointe, David
      • [BioC] Affymetrix annotation package   Crispin Miller
• [BioC] FYI: update on recent flurry of back-dated posts   Seth Falcon
• [BioC] FDR of enrichment analysis and other questions on GOstats   Weiwei Shi
  • [BioC] FDR of enrichment analysis and other questions on GOstats   Mark W Kimpel
• [BioC] GO analysis code snippet   Simon Lin
  • [BioC] GO analysis code snippet   J.Oosting at lumc.nl
  • [BioC] GO analysis code snippet   Adrian Alexa
  • [BioC] GO analysis code snippet   Seth Falcon
• [BioC] Looking for extra Income? Please Read.   hardware.inc505 at gmail.com
• [BioC] affyQCReport before and after normalization   Sebastien Gerega
  • [BioC] affyQCReport before and after normalization   James W. MacDonald
• [BioC] problems in limma   De-Jian,ZHAO
• [BioC] heatmap.2   Kauer Maximilian Otto
• [BioC] statistical course   Noura Chelbat
  • [BioC] statistical course   Kasper Daniel Hansen
• [BioC] Affymetrix annotation package   John Zhang
• [BioC] array CGH software   Igor Wojciechowski
• [BioC] Installing Ruuid library   francesca
  • [BioC] Installing Ruuid library   Herve Pages
• [BioC] Getting all the gene names and the locus link ID from different platforms   Alex Tsoi
  • [BioC] Getting all the gene names and the locus link ID from different platforms   Marc Carlson
• [BioC] Getting all the gene names and the locus link ID from different platforms   John Zhang
  • [BioC] Getting all the gene names and the locus link ID from different platforms   Alex Tsoi

Last message date: Tue Jul 31 20:58:56 CEST 2007
Archived on: Tue Jul 31 20:59:17 CEST 2007

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