[BioC] network (interaction) data repositories for bioc?
Paul Shannon
pshannon at systemsbiology.org
Thu Jul 19 22:22:50 CEST 2007
I use a lot of interaction data, assembled from hither and yon and
usually
on an ad hoc basis -- ranging from kinate-substrate relationships in
yeast
to human protein-protein interactions from pulldown experiments.
Perhaps other do the same, which might mean there's a lot of duplicated
effort in this area.
I wonder: is there any bioc effort to collect, curate and organize
networks? I found
the ppiData in bioc ExperimentData; perhaps that project could be
extended?
Or alternatively, the PSI-MI (The Molecular Interaction XML format
from the Human Proteome
Organization) might suggest good minimal data structures.
Does bioc have anything like this going on right now?
Cheers,
- Paul
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